RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 HLA-DOAP06340 250 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 FOXP4Q8IVH2 680 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 ZKSCAN4Q969J2 545 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 SLC10A4Q96EP9 437 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 HERC5Q9UII4 1024 aaKnown RBP19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 GSG1L2A8MUP6 293 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 GNAT2P19087 354 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 INPP5BP32019 993 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 NMIQ13287 307 aaPredicted RBP19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 TTC6Q86TZ1 520 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 CSADQ9Y600 493 aa19.86■□□□□ 0.77
CCDC28A-202ENST00000611852 BAZ2AQ9UIF9 1905 aaKnown RBP19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 POLR3DP05423 398 aaPredicted RBP19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 PLCD1P51178 756 aa19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 CCDC129Q6ZRS4 1044 aa19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 DDRGK1Q96HY6 314 aa19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 EHD4Q9H223 541 aa19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 DNAJC18Q9H819 358 aa19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 ELP3Q9H9T3 547 aa19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.85■□□□□ 0.77
CCDC28A-202ENST00000611852 HIP1O00291 1037 aa19.84■□□□□ 0.77
CCDC28A-202ENST00000611852 AOC2O75106 756 aa19.84■□□□□ 0.77
CCDC28A-202ENST00000611852 NOGQ13253 232 aa19.84■□□□□ 0.77
CCDC28A-202ENST00000611852 MCMDC2Q4G0Z9 681 aa19.84■□□□□ 0.77
CCDC28A-202ENST00000611852 GIMAP6Q6P9H5 292 aa19.84■□□□□ 0.77
CCDC28A-202ENST00000611852 SNCAIPQ9Y6H5 919 aa19.84■□□□□ 0.77
CCDC28A-202ENST00000611852 PATL2C9JE40 543 aaKnown RBP19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 EVX2Q03828 476 aa19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 NOL9Q5SY16 702 aaKnown RBP19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 CRACR2BQ8N4Y2 399 aaPredicted RBP19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 JMYQ8N9B5 988 aa19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 ZIC5Q96T25 663 aa19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 EPB41L4AQ9HCS5 686 aaPredicted RBP19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 DIAPH3Q9NSV4 1193 aa19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 SERPINB13Q9UIV8 391 aa19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 THSD7BQ9C0I4 1608 aa19.83■□□□□ 0.77
CCDC28A-202ENST00000611852 USP17L12C9JPN9 530 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 USP17L21D6R901 530 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 CTNND1O60716 968 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 CYP2D6P10635 497 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 MAP2K2P36507 400 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 SPRYD7Q5W111 196 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 CTR9Q6PD62 1173 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 CWC27Q6UX04 472 aaKnown RBP19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 WNK4Q96J92 1243 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 TRIM34Q9BYJ4 488 aa19.82■□□□□ 0.76
CCDC28A-202ENST00000611852 FOXP2O15409 715 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 APPP05067 770 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 C12orf60Q5U649 245 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 ZNF589Q86UQ0 364 aaPredicted RBP19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 CNKSR2Q8WXI2 1034 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 OPTNQ96CV9 577 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 PCNTO95613 3336 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 CYP2D7A0A087X1C5 515 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 SPDYE5A6NIY4 337 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 ZBTB48P10074 688 aaPredicted RBP19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 GJA5P36382 358 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 GABPAQ06546 454 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 MKRN3Q13064 507 aaKnown RBP19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 RRP1BQ14684 758 aaKnown RBP19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 AMOTL1Q8IY63 956 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 SCYL3Q8IZE3 742 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 IFNL3Q8IZI9 196 aa19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 ARPP21Q9UBL0 812 aaPredicted RBP19.81■□□□□ 0.76
CCDC28A-202ENST00000611852 CCDC171Q6TFL3 1326 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 SMIM22K7EJ46 135 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 TDO2P48775 406 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 KIF23Q02241 960 aaPredicted RBP19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 SBK1Q52WX2 424 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 BMP2KLQ5H9B9 411 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 VPS53Q5VIR6 699 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 TATDN1Q6P1N9 297 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 ERO1BQ86YB8 467 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 NACAP1Q9BZK3 213 aa19.8■□□□□ 0.76
CCDC28A-202ENST00000611852 DOCK1Q14185 1865 aa19.79■□□□□ 0.76
CCDC28A-202ENST00000611852 CHMLP26374 656 aa19.79■□□□□ 0.76
CCDC28A-202ENST00000611852 CAP2P40123 477 aa19.79■□□□□ 0.76
CCDC28A-202ENST00000611852 OTUD5Q96G74 571 aa19.79■□□□□ 0.76
CCDC28A-202ENST00000611852 PTPRAP18433 802 aa19.78■□□□□ 0.76
CCDC28A-202ENST00000611852 SHMT1P34896 483 aa19.78■□□□□ 0.76
CCDC28A-202ENST00000611852 MFAP1P55081 439 aaKnown RBP19.78■□□□□ 0.76
CCDC28A-202ENST00000611852 DYNLL2Q96FJ2 89 aa19.78■□□□□ 0.76
CCDC28A-202ENST00000611852 PICK1Q9NRD5 415 aa19.78■□□□□ 0.76
CCDC28A-202ENST00000611852 TAOK2Q9UL54 1235 aa19.78■□□□□ 0.76
CCDC28A-202ENST00000611852 HSPD1P10809 573 aaKnown RBP19.77■□□□□ 0.76
CCDC28A-202ENST00000611852 PPATQ06203 517 aa19.77■□□□□ 0.76
CCDC28A-202ENST00000611852 NAPBQ9H115 298 aa19.77■□□□□ 0.76
CCDC28A-202ENST00000611852 IL25Q9H293 177 aa19.77■□□□□ 0.76
CCDC28A-202ENST00000611852 IRF6O14896 467 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 JAG1P78504 1218 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 SLC44A5Q8NCS7 719 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 SWAP70Q9UH65 585 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 LAMB1P07942 1786 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 ATAD5Q96QE3 1844 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 MINDY4BA8MYZ0 360 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 GDF11O95390 407 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 PPIL2Q13356 520 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 ALX1Q15699 326 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms