RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 TSHZ3Q63HK5 1081 aa23.32■■□□□ 1.32
UPF1-212ENST00000601689 RIOK1Q9BRS2 568 aaKnown RBP23.32■■□□□ 1.32
UPF1-212ENST00000601689 SAP30BPQ9UHR5 308 aaKnown RBP23.32■■□□□ 1.32
UPF1-212ENST00000601689 PALD1Q9ULE6 856 aa23.32■■□□□ 1.32
UPF1-212ENST00000601689 TCRBV5S4A2TA0A5A2 114 aa23.31■■□□□ 1.32
UPF1-212ENST00000601689 CHD1LQ86WJ1 897 aa23.31■■□□□ 1.32
UPF1-212ENST00000601689 IFNL1Q8IU54 200 aa23.31■■□□□ 1.32
UPF1-212ENST00000601689 FSD1Q9BTV5 496 aa23.31■■□□□ 1.32
UPF1-212ENST00000601689 TSKSQ9UJT2 592 aa23.31■■□□□ 1.32
UPF1-212ENST00000601689 CCL15-CCL14A0A0B4J2E2 113 aa23.3■■□□□ 1.32
UPF1-212ENST00000601689 PHF20L1A8MW92 1017 aa23.3■■□□□ 1.32
UPF1-212ENST00000601689 IGHDP01880 384 aa23.3■■□□□ 1.32
UPF1-212ENST00000601689 CCL15Q16663 113 aa23.3■■□□□ 1.32
UPF1-212ENST00000601689 TBC1D2Q9BYX2 928 aa23.3■■□□□ 1.32
UPF1-212ENST00000601689 ATP8A2Q9NTI2 1148 aa23.3■■□□□ 1.32
UPF1-212ENST00000601689 RNF113AO15541 343 aaKnown RBP23.29■■□□□ 1.32
UPF1-212ENST00000601689 MBD4O95243 580 aa23.29■■□□□ 1.32
UPF1-212ENST00000601689 GJA5P36382 358 aa23.29■■□□□ 1.32
UPF1-212ENST00000601689 PDE1AP54750 535 aa23.29■■□□□ 1.32
UPF1-212ENST00000601689 PI4K2BQ8TCG2 481 aa23.29■■□□□ 1.32
UPF1-212ENST00000601689 STAP2Q9UGK3 403 aa23.29■■□□□ 1.32
UPF1-212ENST00000601689 SERPINB13Q9UIV8 391 aa23.29■■□□□ 1.32
UPF1-212ENST00000601689 LAMB1P07942 1786 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 TESPA1A2RU30 521 aaPredicted RBP23.28■■□□□ 1.32
UPF1-212ENST00000601689 IRF6O14896 467 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 NUCB1Q02818 461 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 OTUD7AQ8TE49 926 aaPredicted RBP23.28■■□□□ 1.32
UPF1-212ENST00000601689 CNKSR2Q8WXI2 1034 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 APPBP2Q92624 585 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 EVI5LQ96CN4 794 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 ARMT1Q9H993 441 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 GINM1Q9NU53 330 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 MCM9Q9NXL9 1143 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 DOCK1Q14185 1865 aa23.28■■□□□ 1.32
UPF1-212ENST00000601689 CXCL11O14625 94 aa23.27■■□□□ 1.32
UPF1-212ENST00000601689 LCORLQ8N3X6 602 aa23.27■■□□□ 1.32
UPF1-212ENST00000601689 AS3MTQ9HBK9 375 aa23.27■■□□□ 1.32
UPF1-212ENST00000601689 ZHX2Q9Y6X8 837 aa23.27■■□□□ 1.32
UPF1-212ENST00000601689 NAV1Q8NEY1 1877 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 ASNSP08243 561 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 PTPRAP18433 802 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 GNAT2P19087 354 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 CAP2P40123 477 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 SDR42E1Q8WUS8 393 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 MS4A4AQ96JQ5 239 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 EHD4Q9H223 541 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 ZCCHC17Q9NP64 241 aaKnown RBP23.26■■□□□ 1.31
UPF1-212ENST00000601689 TAOK2Q9UL54 1235 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 SLC4A4Q9Y6R1 1079 aa23.26■■□□□ 1.31
UPF1-212ENST00000601689 FAM196BA6NMK8 535 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 TRIM6-TRIM34B2RNG4 842 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 TBC1D8O95759 1140 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 SLC4A8Q2Y0W8 1093 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 COL13A1Q5TAT6 717 aaPredicted RBP23.25■■□□□ 1.31
UPF1-212ENST00000601689 FASTKD5Q7L8L6 764 aaKnown RBP23.25■■□□□ 1.31
UPF1-212ENST00000601689 METTL16Q86W50 562 aaKnown RBP23.25■■□□□ 1.31
UPF1-212ENST00000601689 TICAM2Q86XR7 235 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 CFHR5Q9BXR6 569 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 SALL3Q9BXA9 1300 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 CASP8AP2Q9UKL3 1982 aa23.25■■□□□ 1.31
UPF1-212ENST00000601689 TNS4Q8IZW8 715 aa23.24■■□□□ 1.31
UPF1-212ENST00000601689 PUS7LQ9H0K6 701 aaKnown RBP23.24■■□□□ 1.31
UPF1-212ENST00000601689 ZFYVE28Q9HCC9 887 aa23.24■■□□□ 1.31
UPF1-212ENST00000601689 DCP1AQ9NPI6 582 aaPredicted RBP23.24■■□□□ 1.31
UPF1-212ENST00000601689 KCNH4Q9UQ05 1017 aa23.24■■□□□ 1.31
UPF1-212ENST00000601689 USP17L5A8MUK1 530 aa23.23■■□□□ 1.31
UPF1-212ENST00000601689 IGF2BP3O00425 579 aaKnown RBP eCLIP23.23■■□□□ 1.31
UPF1-212ENST00000601689 TAF1CQ15572 869 aaPredicted RBP23.23■■□□□ 1.31
UPF1-212ENST00000601689 NOM1Q5C9Z4 860 aaKnown RBP23.23■■□□□ 1.31
UPF1-212ENST00000601689 BRI3BPQ8WY22 251 aa23.23■■□□□ 1.31
UPF1-212ENST00000601689 CABP5Q9NP86 173 aa23.23■■□□□ 1.31
UPF1-212ENST00000601689 ATAD5Q96QE3 1844 aa23.23■■□□□ 1.31
UPF1-212ENST00000601689 NEFLP07196 543 aa23.22■■□□□ 1.31
UPF1-212ENST00000601689 NACAP1Q9BZK3 213 aa23.22■■□□□ 1.31
UPF1-212ENST00000601689 SWAP70Q9UH65 585 aa23.22■■□□□ 1.31
UPF1-212ENST00000601689 APPP05067 770 aa23.21■■□□□ 1.31
UPF1-212ENST00000601689 SLFNL1Q499Z3 407 aa23.21■■□□□ 1.31
UPF1-212ENST00000601689 CERKLQ49MI3 558 aaPredicted RBP23.21■■□□□ 1.31
UPF1-212ENST00000601689 RILPL2Q969X0 211 aa23.21■■□□□ 1.31
UPF1-212ENST00000601689 AFG3L2Q9Y4W6 797 aa23.21■■□□□ 1.31
UPF1-212ENST00000601689 GPR25O00155 361 aa23.2■■□□□ 1.3
UPF1-212ENST00000601689 CENPBP07199 599 aaPredicted RBP23.2■■□□□ 1.3
UPF1-212ENST00000601689 GIMAP6Q6P9H5 292 aa23.2■■□□□ 1.3
UPF1-212ENST00000601689 ZNF280CQ8ND82 737 aa23.2■■□□□ 1.3
UPF1-212ENST00000601689 STRBPQ96SI9 672 aaKnown RBP23.2■■□□□ 1.3
UPF1-212ENST00000601689 PTPN18Q99952 460 aa23.2■■□□□ 1.3
UPF1-212ENST00000601689 OSBPL3Q9H4L5 887 aa23.2■■□□□ 1.3
UPF1-212ENST00000601689 ARPP21Q9UBL0 812 aaPredicted RBP23.2■■□□□ 1.3
UPF1-212ENST00000601689 BAZ2AQ9UIF9 1905 aaKnown RBP23.2■■□□□ 1.3
UPF1-212ENST00000601689 TRIM75PA6NK02 468 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 GPAA1O43292 621 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 FKTNO75072 461 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 SLURP2P0DP57 97 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 PLCD1P51178 756 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 ARHGEF6Q15052 776 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 ANKRD23Q86SG2 305 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 OSBP2Q969R2 916 aa23.19■■□□□ 1.3
UPF1-212ENST00000601689 MYH8P13535 1937 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 SIPA1L1O43166 1804 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 BTBD19C9JJ37 291 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms