RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 SLFNL1Q499Z3 407 aa20.34■□□□□ 0.85
TRIM28-215ENST00000601150 LCORLQ8N3X6 602 aa20.34■□□□□ 0.85
TRIM28-215ENST00000601150 TSKSQ9UJT2 592 aa20.34■□□□□ 0.85
TRIM28-215ENST00000601150 PALD1Q9ULE6 856 aa20.34■□□□□ 0.85
TRIM28-215ENST00000601150 FAM196BA6NMK8 535 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 TRPA1O75762 1119 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 MBD4O95243 580 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 CHGBP05060 677 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 HLA-DOAP06340 250 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 PPATQ06203 517 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 PPIL2Q13356 520 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 LRRFIP1Q32MZ4 808 aaKnown RBP20.33■□□□□ 0.85
TRIM28-215ENST00000601150 FOXP4Q8IVH2 680 aaPredicted RBP20.33■□□□□ 0.85
TRIM28-215ENST00000601150 SCYL3Q8IZE3 742 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 ARMT1Q9H993 441 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 PRDM10Q9NQV6 1147 aa20.33■□□□□ 0.85
TRIM28-215ENST00000601150 PHIPQ8WWQ0 1821 aa20.32■□□□□ 0.84
TRIM28-215ENST00000601150 BAZ2AQ9UIF9 1905 aaKnown RBP20.32■□□□□ 0.84
TRIM28-215ENST00000601150 CTNND1O60716 968 aaKnown RBP20.32■□□□□ 0.84
TRIM28-215ENST00000601150 ZFYP08048 801 aaPredicted RBP20.32■□□□□ 0.84
TRIM28-215ENST00000601150 GTF2A2P52657 109 aa20.32■□□□□ 0.84
TRIM28-215ENST00000601150 PICK1Q9NRD5 415 aa20.32■□□□□ 0.84
TRIM28-215ENST00000601150 TESPA1A2RU30 521 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-215ENST00000601150 RNF113AO15541 343 aaKnown RBP20.31■□□□□ 0.84
TRIM28-215ENST00000601150 IFNL1Q8IU54 200 aa20.31■□□□□ 0.84
TRIM28-215ENST00000601150 CRACR2BQ8N4Y2 399 aaPredicted RBP20.31■□□□□ 0.84
TRIM28-215ENST00000601150 MS4A4AQ96JQ5 239 aa20.31■□□□□ 0.84
TRIM28-215ENST00000601150 TRIM34Q9BYJ4 488 aa20.31■□□□□ 0.84
TRIM28-215ENST00000601150 ALDH1A1P00352 501 aa20.3■□□□□ 0.84
TRIM28-215ENST00000601150 TTC6Q86TZ1 520 aa20.3■□□□□ 0.84
TRIM28-215ENST00000601150 METTL16Q86W50 562 aaKnown RBP20.3■□□□□ 0.84
TRIM28-215ENST00000601150 APPBP2Q92624 585 aa20.3■□□□□ 0.84
TRIM28-215ENST00000601150 FSD1Q9BTV5 496 aa20.3■□□□□ 0.84
TRIM28-215ENST00000601150 PUS7LQ9H0K6 701 aaKnown RBP20.3■□□□□ 0.84
TRIM28-215ENST00000601150 CASP8AP2Q9UKL3 1982 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 CCL15-CCL14A0A0B4J2E2 113 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 IRF6O14896 467 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 SNAPC2Q13487 334 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 CCL15Q16663 113 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 SLC4A8Q2Y0W8 1093 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 OTUD7BQ6GQQ9 843 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 SDR42E1Q8WUS8 393 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 ATP8A2Q9NTI2 1148 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 MCM9Q9NXL9 1143 aa20.29■□□□□ 0.84
TRIM28-215ENST00000601150 PTPRFP10586 1907 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 IGF2BP3O00425 579 aaKnown RBP eCLIP20.28■□□□□ 0.84
TRIM28-215ENST00000601150 CETPP11597 493 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 PTPRAP18433 802 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 CAP2P40123 477 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 BRI3BPQ8WY22 251 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 EVI5LQ96CN4 794 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 EHD4Q9H223 541 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 DNAJC18Q9H819 358 aa20.28■□□□□ 0.84
TRIM28-215ENST00000601150 DCP1AQ9NPI6 582 aaPredicted RBP20.28■□□□□ 0.84
TRIM28-215ENST00000601150 MYH8P13535 1937 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 PRKAB2O43741 272 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 POLR3DP05423 398 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-215ENST00000601150 COL13A1Q5TAT6 717 aaPredicted RBP20.27■□□□□ 0.84
TRIM28-215ENST00000601150 PLEKHM2Q8IWE5 1019 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 OSBP2Q969R2 916 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 DDRGK1Q96HY6 314 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 PTPN18Q99952 460 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 CFHR5Q9BXR6 569 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 OSBPL3Q9H4L5 887 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 SERPINB13Q9UIV8 391 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 KCNH4Q9UQ05 1017 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 SLC4A4Q9Y6R1 1079 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 ZHX2Q9Y6X8 837 aa20.27■□□□□ 0.84
TRIM28-215ENST00000601150 CXCL11O14625 94 aa20.26■□□□□ 0.83
TRIM28-215ENST00000601150 TBC1D8O95759 1140 aa20.26■□□□□ 0.83
TRIM28-215ENST00000601150 RRP1BQ14684 758 aaKnown RBP20.26■□□□□ 0.83
TRIM28-215ENST00000601150 STRBPQ96SI9 672 aaKnown RBP20.26■□□□□ 0.83
TRIM28-215ENST00000601150 PLCD1P51178 756 aa20.25■□□□□ 0.83
TRIM28-215ENST00000601150 GPAA1O43292 621 aa20.24■□□□□ 0.83
TRIM28-215ENST00000601150 AMOTL1Q8IY63 956 aa20.24■□□□□ 0.83
TRIM28-215ENST00000601150 TBC1D2Q9BYX2 928 aa20.24■□□□□ 0.83
TRIM28-215ENST00000601150 GINM1Q9NU53 330 aa20.24■□□□□ 0.83
TRIM28-215ENST00000601150 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.24■□□□□ 0.83
TRIM28-215ENST00000601150 AFG3L2Q9Y4W6 797 aa20.24■□□□□ 0.83
TRIM28-215ENST00000601150 TRIM6-TRIM34B2RNG4 842 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 M0R2C6 588 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 ASNSP08243 561 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 GNAT2P19087 354 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 NOM1Q5C9Z4 860 aaKnown RBP20.23■□□□□ 0.83
TRIM28-215ENST00000601150 ZMYM1Q5SVZ6 1142 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 TATDN1Q6P1N9 297 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 TICAM2Q86XR7 235 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 ZCCHC17Q9NP64 241 aaKnown RBP20.23■□□□□ 0.83
TRIM28-215ENST00000601150 TAOK2Q9UL54 1235 aa20.23■□□□□ 0.83
TRIM28-215ENST00000601150 USP17L5A8MUK1 530 aa20.22■□□□□ 0.83
TRIM28-215ENST00000601150 GDF11O95390 407 aa20.22■□□□□ 0.83
TRIM28-215ENST00000601150 CYP2D6P10635 497 aa20.22■□□□□ 0.83
TRIM28-215ENST00000601150 GABPAQ06546 454 aa20.22■□□□□ 0.83
TRIM28-215ENST00000601150 CCDC84Q86UT8 332 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-215ENST00000601150 FAM43AQ8N2R8 423 aa20.22■□□□□ 0.83
TRIM28-215ENST00000601150 A0A0G2JLL6 359 aaPredicted RBP20.21■□□□□ 0.83
TRIM28-215ENST00000601150 BTBD19C9JJ37 291 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 USP17L12C9JPN9 530 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 USP17L21D6R901 530 aa20.21■□□□□ 0.83
TRIM28-215ENST00000601150 GPR25O00155 361 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 220.6 ms