RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZGPATQ8N5A5 531 aaKnown RBP7.6□□□□□ -1.19
VRK3-220ENST00000600259 PROCA1Q8NCQ7 364 aaPredicted RBP7.6□□□□□ -1.19
VRK3-220ENST00000600259 XAGE2Q96GT9 111 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 MEIS3Q99687 375 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.6□□□□□ -1.19
VRK3-220ENST00000600259 HMG20BQ9P0W2 317 aa7.6□□□□□ -1.19
VRK3-220ENST00000600259 NOB1Q9ULX3 412 aaKnown RBP7.6□□□□□ -1.19
VRK3-220ENST00000600259 DOCK3Q8IZD9 2030 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 A0A1B0GUL7 405 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 ZNF316A6NFI3 1004 aaPredicted RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 MAP4K4O95819 1239 aaPredicted RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 CAP2P40123 477 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 TFCP2Q12800 502 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 PICALMQ13492 652 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 MAP3K21Q5TCX8 1036 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 SPTY2D1Q68D10 685 aaPredicted RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 SAMD1Q6SPF0 538 aaPredicted RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 PI16Q6UXB8 463 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 TBC1D9Q6ZT07 1266 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 METTL16Q86W50 562 aaKnown RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 SLF2Q8IX21 1173 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 ZNF280CQ8ND82 737 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 COA7Q96BR5 231 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 NSUN4Q96CB9 384 aaKnown RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 OSBPL5Q9H0X9 879 aaPredicted RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 ASCC2Q9H1I8 757 aaPredicted RBP7.59□□□□□ -1.19
VRK3-220ENST00000600259 MORF4L1Q9UBU8 362 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 ABCF2Q9UG63 623 aa7.59□□□□□ -1.19
VRK3-220ENST00000600259 RPTORQ8N122 1335 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 PHIPQ8WWQ0 1821 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 DLL1O00548 723 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 PEX10O60683 326 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 HOXA7P31268 230 aaPredicted RBP7.58□□□□□ -1.2
VRK3-220ENST00000600259 GCLCP48506 637 aaPredicted RBP7.58□□□□□ -1.2
VRK3-220ENST00000600259 HMGCS2P54868 508 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 GPR153Q6NV75 609 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 ERICH6Q7L0X2 663 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 NECAB2Q7Z6G3 386 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 DZIP1Q86YF9 867 aaKnown RBP7.58□□□□□ -1.2
VRK3-220ENST00000600259 ANKLE1Q8NAG6 615 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 SLC17A8Q8NDX2 589 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 SMCR8Q8TEV9 937 aaPredicted RBP7.58□□□□□ -1.2
VRK3-220ENST00000600259 USP6NLQ92738 828 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 P2RX7Q99572 595 aaKnown RBP7.58□□□□□ -1.2
VRK3-220ENST00000600259 WDR18Q9BV38 432 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 XPO5Q9HAV4 1204 aaKnown RBP eCLIP7.58□□□□□ -1.2
VRK3-220ENST00000600259 TXNRD2Q9NNW7 524 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 SMC4Q9NTJ3 1288 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 OGDHLQ9ULD0 1010 aa7.58□□□□□ -1.2
VRK3-220ENST00000600259 USP17L5A8MUK1 530 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 HMGCRP04035 888 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 LDHCP07864 332 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 COL6A1P12109 1028 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 ARID4AP29374 1257 aaPredicted RBP7.57□□□□□ -1.2
VRK3-220ENST00000600259 PPP4CP60510 307 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 MVPQ14764 893 aaKnown RBP7.57□□□□□ -1.2
VRK3-220ENST00000600259 SHROOM1Q2M3G4 852 aaPredicted RBP7.57□□□□□ -1.2
VRK3-220ENST00000600259 Q3C1V9 767 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 LRIT3Q3SXY7 679 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 LHX8Q68G74 356 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 SPATA5Q8NB90 893 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 TRIB2Q92519 343 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 TBC1D2Q9BYX2 928 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 API5Q9BZZ5 524 aaKnown RBP7.57□□□□□ -1.2
VRK3-220ENST00000600259 DNAJC18Q9H819 358 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 RBPJLQ9UBG7 517 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 PNMA3Q9UL41 463 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 AKAP2Q9Y2D5 859 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 MGAMO43451 1857 aa7.57□□□□□ -1.2
VRK3-220ENST00000600259 PTPRFP10586 1907 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 COL2A1P02458 1487 aaPredicted RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 PFASO15067 1338 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 CT47B1P0C2W7 299 aaPredicted RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 XRCC5P13010 732 aaKnown RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 MCAMP43121 646 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 RARSP54136 660 aaKnown RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 BACE1P56817 501 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 SH3RF3Q8TEJ3 882 aaPredicted RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 ARHGAP45Q92619 1136 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 NBPF3Q9H094 633 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 HMX1Q9NP08 348 aaPredicted RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 MTMR10Q9NXD2 777 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 PI4KBQ9UBF8 816 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 HERC5Q9UII4 1024 aaKnown RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 TAOK2Q9UL54 1235 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 ZMYND8Q9ULU4 1186 aaPredicted RBP7.56□□□□□ -1.2
VRK3-220ENST00000600259 HDAC5Q9UQL6 1122 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 AK9Q5TCS8 1911 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 MYH2Q9UKX2 1941 aa7.56□□□□□ -1.2
VRK3-220ENST00000600259 ALPK3Q96L96 1907 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 PNMA6EA0A0J9YXQ4 647 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 SRGAP3O43295 1099 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 IGHA2P01877 340 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 SYN1P17600 705 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 CYP2B6P20813 491 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 MAGEA10P43363 369 aaPredicted RBP7.55□□□□□ -1.2
VRK3-220ENST00000600259 GSTO1P78417 241 aa7.55□□□□□ -1.2
VRK3-220ENST00000600259 CACNB2Q08289 660 aaPredicted RBP7.55□□□□□ -1.2
VRK3-220ENST00000600259 PABPC4Q13310 644 aaKnown RBP eCLIP7.55□□□□□ -1.2
VRK3-220ENST00000600259 MORN1Q5T089 497 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms