RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 SCYL3Q8IZE3 742 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 PICK1Q9NRD5 415 aa15.37■□□□□ 0.05
UPF1-208ENST00000600012 PHF20L1A8MW92 1017 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 ECM2O94769 699 aaPredicted RBP15.36■□□□□ 0.05
UPF1-208ENST00000600012 FMNL1O95466 1100 aaPredicted RBP15.36■□□□□ 0.05
UPF1-208ENST00000600012 GRK4P32298 578 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 SPTY2D1Q68D10 685 aaPredicted RBP15.36■□□□□ 0.05
UPF1-208ENST00000600012 RAET1EQ8TD07 263 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 FAM163AQ96GL9 167 aaPredicted RBP15.36■□□□□ 0.05
UPF1-208ENST00000600012 OSBPL3Q9H4L5 887 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 ABCF2Q9UG63 623 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 STAP2Q9UGK3 403 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 DBNLQ9UJU6 430 aaKnown RBP15.36■□□□□ 0.05
UPF1-208ENST00000600012 MYPNQ86TC9 1320 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 PHIPQ8WWQ0 1821 aa15.36■□□□□ 0.05
UPF1-208ENST00000600012 A0A0G2JLL6 359 aaPredicted RBP15.35■□□□□ 0.05
UPF1-208ENST00000600012 BCRP11274 1271 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 GPAT2Q6NUI2 795 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 FASTKD5Q7L8L6 764 aaKnown RBP15.35■□□□□ 0.05
UPF1-208ENST00000600012 PRRT2Q7Z6L0 340 aaPredicted RBP15.35■□□□□ 0.05
UPF1-208ENST00000600012 NEUROD6Q96NK8 337 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 DBNDD2Q9BQY9 259 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 GPR108Q9NPR9 543 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 AKAP2Q9Y2D5 859 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 ZHX2Q9Y6X8 837 aa15.35■□□□□ 0.05
UPF1-208ENST00000600012 A0A1B0GUL7 405 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 PTPRAP18433 802 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 BTDP43251 543 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 FCGRTP55899 365 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 TIMM10P62072 90 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 MAP3K10Q02779 954 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 MTFR1Q15390 333 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 BMP2KLQ5H9B9 411 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 SH3BP5LQ7L8J4 393 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 NKX2-3Q8TAU0 364 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 PI4K2BQ8TCG2 481 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 SLC45A1Q9Y2W3 748 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 MROH7-TTC4A0A0A0MT08 1334 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 TTC41PQ6P2S7 1318 aa15.34■□□□□ 0.05
UPF1-208ENST00000600012 DDTLA6NHG4 134 aaPredicted RBP15.33■□□□□ 0.04
UPF1-208ENST00000600012 CTNND1O60716 968 aaKnown RBP15.33■□□□□ 0.04
UPF1-208ENST00000600012 CYP2C8P10632 490 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 ERICH6Q7L0X2 663 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 SHISA4Q96DD7 197 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 XAGE2Q96GT9 111 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 GPATCH3Q96I76 525 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 DDX4Q9NQI0 724 aaKnown RBP15.33■□□□□ 0.04
UPF1-208ENST00000600012 ECHDC1Q9NTX5 307 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 AFG3L2Q9Y4W6 797 aa15.33■□□□□ 0.04
UPF1-208ENST00000600012 TRIOBPQ9H2D6 2365 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 NPM3O75607 178 aaKnown RBP15.32■□□□□ 0.04
UPF1-208ENST00000600012 GJB1P08034 283 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 UBXN2AP68543 259 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 PRKCZQ05513 592 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 PICALMQ13492 652 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 C8orf34Q49A92 452 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 GADL1Q6ZQY3 521 aa15.32■□□□□ 0.04
UPF1-208ENST00000600012 BIN2Q9UBW5 565 aaPredicted RBP15.32■□□□□ 0.04
UPF1-208ENST00000600012 ATAD5Q96QE3 1844 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 MYO5AQ9Y4I1 1855 aaKnown RBP15.31■□□□□ 0.04
UPF1-208ENST00000600012 MYH7P12883 1935 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 GPR75-ASB3A0A0A6YYF3 556 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 MAP4K4O95819 1239 aaPredicted RBP15.31■□□□□ 0.04
UPF1-208ENST00000600012 CCL5P13501 91 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 SDSP20132 328 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 GJA8P48165 433 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 FXR1P51114 621 aaKnown RBP eCLIP15.31■□□□□ 0.04
UPF1-208ENST00000600012 RHBDL3P58872 404 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 MECOMQ03112 1051 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 SLAIN1Q8ND83 568 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 COLQQ9Y215 455 aaPredicted RBP15.31■□□□□ 0.04
UPF1-208ENST00000600012 COL2A1P02458 1487 aaPredicted RBP15.31■□□□□ 0.04
UPF1-208ENST00000600012 DOCK3Q8IZD9 2030 aa15.31■□□□□ 0.04
UPF1-208ENST00000600012 H0YGN5 161 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 ERC2O15083 957 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 TBC1D12O60347 775 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 GLRX3O76003 335 aaKnown RBP15.3■□□□□ 0.04
UPF1-208ENST00000600012 LDHCP07864 332 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 GSTO1P78417 241 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 SMCR8Q8TEV9 937 aaPredicted RBP15.3■□□□□ 0.04
UPF1-208ENST00000600012 RNF208Q9H0X6 261 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 HMG20BQ9P0W2 317 aa15.3■□□□□ 0.04
UPF1-208ENST00000600012 LOC285556D6RIA3 1793 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 TRIM75PA6NK02 468 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 TRIM6-TRIM34B2RNG4 842 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 SLURP2P0DP57 97 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 GORABQ5T7V8 394 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 SPATA5Q8NB90 893 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 ZNF384Q8TF68 577 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 HTATIP2Q9BUP3 242 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 BOLA2Q9H3K6 86 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 GABRQQ9UN88 632 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 AGTPBP1Q9UPW5 1226 aa15.29■□□□□ 0.04
UPF1-208ENST00000600012 TNPO2O14787 897 aaKnown RBP15.28■□□□□ 0.04
UPF1-208ENST00000600012 ADCY3O60266 1144 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 ARID4AP29374 1257 aaPredicted RBP15.28■□□□□ 0.04
UPF1-208ENST00000600012 FLT3LGP49771 235 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 UBE2Q1Q7Z7E8 422 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 RILPL2Q969X0 211 aa15.28■□□□□ 0.04
UPF1-208ENST00000600012 NSUN4Q96CB9 384 aaKnown RBP15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms