RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FAM83AQ86UY5 434 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 MB21D2Q8IYB1 491 aaPredicted RBP17.97■□□□□ 0.47
TRIM28-209ENST00000597423 FAM151AQ8WW52 585 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 VEZTQ9HBM0 779 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 DDX4Q9NQI0 724 aaKnown RBP17.97■□□□□ 0.47
TRIM28-209ENST00000597423 FAM198AQ9UFP1 575 aa17.97■□□□□ 0.47
TRIM28-209ENST00000597423 CLRN2A0PK11 232 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 KDM4AO75164 1064 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 DDNO94850 711 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-209ENST00000597423 PLCD1P51178 756 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 NFIAQ12857 509 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 IQCA1Q86XH1 822 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 STK11IPQ8N1F8 1099 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 CRACR2BQ8N4Y2 399 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-209ENST00000597423 UBAC1Q9BSL1 405 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 EHD4Q9H223 541 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 SH2B1Q9NRF2 756 aaPredicted RBP17.96■□□□□ 0.47
TRIM28-209ENST00000597423 ZSWIM5Q9P217 1185 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 SERPINB13Q9UIV8 391 aa17.96■□□□□ 0.47
TRIM28-209ENST00000597423 ROBO3Q96MS0 1386 aa17.95■□□□□ 0.46
TRIM28-209ENST00000597423 TCP10L2B9ZVM9 353 aa17.95■□□□□ 0.46
TRIM28-209ENST00000597423 CACNB3P54284 484 aa17.95■□□□□ 0.46
TRIM28-209ENST00000597423 TBC1D10BQ4KMP7 808 aaPredicted RBP17.95■□□□□ 0.46
TRIM28-209ENST00000597423 C16orf86Q6ZW13 317 aa17.95■□□□□ 0.46
TRIM28-209ENST00000597423 SAMD7Q7Z3H4 446 aa17.95■□□□□ 0.46
TRIM28-209ENST00000597423 ADARB2Q9NS39 739 aaKnown RBP17.95■□□□□ 0.46
TRIM28-209ENST00000597423 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.95■□□□□ 0.46
TRIM28-209ENST00000597423 NEDD4P46934 1319 aa17.95■□□□□ 0.46
TRIM28-209ENST00000597423 GLTPD2A6NH11 291 aa17.94■□□□□ 0.46
TRIM28-209ENST00000597423 TSPY2A6NKD2 308 aa17.94■□□□□ 0.46
TRIM28-209ENST00000597423 IFIT3O14879 490 aaKnown RBP17.94■□□□□ 0.46
TRIM28-209ENST00000597423 CDK8P49336 464 aa17.94■□□□□ 0.46
TRIM28-209ENST00000597423 NBPF9Q3BBW0 867 aa17.94■□□□□ 0.46
TRIM28-209ENST00000597423 SYNE3Q6ZMZ3 975 aa17.94■□□□□ 0.46
TRIM28-209ENST00000597423 INCENPQ9NQS7 918 aa17.94■□□□□ 0.46
TRIM28-209ENST00000597423 SLC4A8Q2Y0W8 1093 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 TMEM67Q5HYA8 995 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 PPP4R3BQ5MIZ7 849 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 CHST3Q7LGC8 479 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 APOBEC3FQ8IUX4 373 aaKnown RBP17.93■□□□□ 0.46
TRIM28-209ENST00000597423 HOOK2Q96ED9 719 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 DYNLL2Q96FJ2 89 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 L3MBTL3Q96JM7 780 aaPredicted RBP17.93■□□□□ 0.46
TRIM28-209ENST00000597423 CCDC17Q96LX7 622 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 TCEANC2Q96MN5 208 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 AGXT2Q9BYV1 514 aa17.93■□□□□ 0.46
TRIM28-209ENST00000597423 ANGEL1Q9UNK9 670 aaKnown RBP17.93■□□□□ 0.46
TRIM28-209ENST00000597423 SHTN1A0MZ66 631 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 IQCA1LA6NCM1 817 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 PRDM1O75626 825 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 CD2BP2O95400 341 aaKnown RBP17.92■□□□□ 0.46
TRIM28-209ENST00000597423 TSPY3P0CV98 308 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 TSPY8P0CW00 308 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 EPS15P42566 896 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 LIFRP42702 1097 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 TFAP4Q01664 338 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 NFXL1Q6ZNB6 911 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 CYB5R4Q7L1T6 521 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 ZFPM1Q8IX07 1006 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 BRF1Q92994 677 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 ZNF274Q96GC6 653 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-209ENST00000597423 TMX3Q96JJ7 454 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 HERC5Q9UII4 1024 aaKnown RBP17.92■□□□□ 0.46
TRIM28-209ENST00000597423 HACL1Q9UJ83 578 aa17.92■□□□□ 0.46
TRIM28-209ENST00000597423 ZNF646O15015 1829 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-209ENST00000597423 COL2A1P02458 1487 aaPredicted RBP17.92■□□□□ 0.46
TRIM28-209ENST00000597423 DICER1Q9UPY3 1922 aaKnown RBP17.92■□□□□ 0.46
TRIM28-209ENST00000597423 ATRNL1Q5VV63 1379 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 GABPAQ06546 454 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 TOB2Q14106 344 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-209ENST00000597423 WTAPQ15007 396 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 NOL8Q76FK4 1167 aaKnown RBP17.91■□□□□ 0.46
TRIM28-209ENST00000597423 IGDCC4Q8TDY8 1250 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 CSRNP1Q96S65 589 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 ZSCAN10Q96SZ4 725 aaPredicted RBP17.91■□□□□ 0.46
TRIM28-209ENST00000597423 LRRC2Q9BYS8 371 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 TCP11L1Q9NUJ3 509 aa17.91■□□□□ 0.46
TRIM28-209ENST00000597423 DDTLA6NHG4 134 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-209ENST00000597423 CCDC69A6NI79 296 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 SH2B2O14492 632 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-209ENST00000597423 EVCP57679 992 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 ANTXR2P58335 489 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 RASA3Q14644 834 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 USP50Q70EL3 339 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-209ENST00000597423 METTL16Q86W50 562 aaKnown RBP17.9■□□□□ 0.46
TRIM28-209ENST00000597423 SLKQ9H2G2 1235 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-209ENST00000597423 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.9■□□□□ 0.46
TRIM28-209ENST00000597423 PPP2R3BQ9Y5P8 575 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 TACC3Q9Y6A5 838 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 SBF1O95248 1867 aa17.9■□□□□ 0.46
TRIM28-209ENST00000597423 DHX16O60231 1041 aaKnown RBP17.89■□□□□ 0.45
TRIM28-209ENST00000597423 TBC1D12O60347 775 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 RASA1P20936 1047 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 SLC4A3P48751 1232 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 FAM47AQ5JRC9 791 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 SGMS1Q86VZ5 419 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 DGKHQ86XP1 1220 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 NEDD1Q8NHV4 660 aa17.89■□□□□ 0.45
TRIM28-209ENST00000597423 INTS4Q96HW7 963 aaKnown RBP17.89■□□□□ 0.45
TRIM28-209ENST00000597423 CWC22Q9HCG8 908 aaKnown RBP17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms