RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 SDR42E1Q8WUS8 393 aa13.36□□□□□ -0.27
LIG1-211ENST00000596457 MCOLN1Q9GZU1 580 aa13.36□□□□□ -0.27
LIG1-211ENST00000596457 PUS7LQ9H0K6 701 aaKnown RBP13.36□□□□□ -0.27
LIG1-211ENST00000596457 PRKAB2O43741 272 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 NPM3O75607 178 aaKnown RBP13.35□□□□□ -0.27
LIG1-211ENST00000596457 POLR3DP05423 398 aaPredicted RBP13.35□□□□□ -0.27
LIG1-211ENST00000596457 HLA-DOAP06340 250 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 PDE4AP27815 886 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 LRRFIP1Q32MZ4 808 aaKnown RBP13.35□□□□□ -0.27
LIG1-211ENST00000596457 CNKSR2Q8WXI2 1034 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 EVI5LQ96CN4 794 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 OPTNQ96CV9 577 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 WNK4Q96J92 1243 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 SLC4A4Q9Y6R1 1079 aa13.35□□□□□ -0.27
LIG1-211ENST00000596457 ZFYP08048 801 aaPredicted RBP13.34□□□□□ -0.27
LIG1-211ENST00000596457 SPRYD7Q5W111 196 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 APPBP2Q92624 585 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 OSBP2Q969R2 916 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 OTUD5Q96G74 571 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 CCDC136Q96JN2 1154 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 SEC62Q99442 399 aaKnown RBP13.34□□□□□ -0.27
LIG1-211ENST00000596457 DHX36Q9H2U1 1008 aaKnown RBP13.34□□□□□ -0.27
LIG1-211ENST00000596457 MCM9Q9NXL9 1143 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 BAZ2AQ9UIF9 1905 aaKnown RBP13.34□□□□□ -0.27
LIG1-211ENST00000596457 SIPA1L1O43166 1804 aa13.34□□□□□ -0.27
LIG1-211ENST00000596457 ATRNL1Q5VV63 1379 aa13.33□□□□□ -0.27
LIG1-211ENST00000596457 M0R2C6 588 aa13.33□□□□□ -0.28
LIG1-211ENST00000596457 GJA5P36382 358 aa13.33□□□□□ -0.28
LIG1-211ENST00000596457 PI4KBQ9UBF8 816 aa13.33□□□□□ -0.28
LIG1-211ENST00000596457 TSKSQ9UJT2 592 aa13.33□□□□□ -0.28
LIG1-211ENST00000596457 SNCAIPQ9Y6H5 919 aa13.33□□□□□ -0.28
LIG1-211ENST00000596457 ATAD5Q96QE3 1844 aa13.33□□□□□ -0.28
LIG1-211ENST00000596457 APPP05067 770 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 INHBEP58166 350 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 TTC6Q86TZ1 520 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 FOXP4Q8IVH2 680 aaPredicted RBP13.32□□□□□ -0.28
LIG1-211ENST00000596457 DDRGK1Q96HY6 314 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 OSBPL3Q9H4L5 887 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 DCP1AQ9NPI6 582 aaPredicted RBP13.32□□□□□ -0.28
LIG1-211ENST00000596457 PICK1Q9NRD5 415 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 RNF186Q9NXI6 227 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 ZNF112Q9UJU3 913 aa13.32□□□□□ -0.28
LIG1-211ENST00000596457 DOCK1Q14185 1865 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 COL2A1P02458 1487 aaPredicted RBP13.31□□□□□ -0.28
LIG1-211ENST00000596457 CASP8AP2Q9UKL3 1982 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 PHF20L1A8MW92 1017 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 GPAA1O43292 621 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 TBC1D12O60347 775 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 ZBTB48P10074 688 aaPredicted RBP13.31□□□□□ -0.28
LIG1-211ENST00000596457 CYP2D6P10635 497 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 TM4SF4P48230 202 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 SOX10P56693 466 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 SREBF2Q12772 1141 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 CCDC129Q6ZRS4 1044 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 CENPQQ7L2Z9 268 aaPredicted RBP13.31□□□□□ -0.28
LIG1-211ENST00000596457 ERO1BQ86YB8 467 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 STRBPQ96SI9 672 aaKnown RBP13.31□□□□□ -0.28
LIG1-211ENST00000596457 ATP8A2Q9NTI2 1148 aa13.31□□□□□ -0.28
LIG1-211ENST00000596457 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.31□□□□□ -0.28
LIG1-211ENST00000596457 HERC5Q9UII4 1024 aaKnown RBP13.31□□□□□ -0.28
LIG1-211ENST00000596457 CYP2D7A0A087X1C5 515 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 MANSC4A6NHS7 340 aaPredicted RBP13.3□□□□□ -0.28
LIG1-211ENST00000596457 CTNND1O60716 968 aaKnown RBP13.3□□□□□ -0.28
LIG1-211ENST00000596457 TRPA1O75762 1119 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 GDF11O95390 407 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 PLCD1P51178 756 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 MAP3K10Q02779 954 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 EVX2Q03828 476 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 ZMYM1Q5SVZ6 1142 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 CCDC84Q86UT8 332 aaPredicted RBP13.3□□□□□ -0.28
LIG1-211ENST00000596457 AMOTL1Q8IY63 956 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 SCYL3Q8IZE3 742 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 STK11IPQ8N1F8 1099 aa13.3□□□□□ -0.28
LIG1-211ENST00000596457 MYH8P13535 1937 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 SPDYE5A6NIY4 337 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 USP17L12C9JPN9 530 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 USP17L21D6R901 530 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 ALDH1A1P00352 501 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 NMIQ13287 307 aaPredicted RBP13.29□□□□□ -0.28
LIG1-211ENST00000596457 DGKZQ13574 1117 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 RRP1BQ14684 758 aaKnown RBP13.29□□□□□ -0.28
LIG1-211ENST00000596457 NOM1Q5C9Z4 860 aaKnown RBP13.29□□□□□ -0.28
LIG1-211ENST00000596457 NOL9Q5SY16 702 aaKnown RBP13.29□□□□□ -0.28
LIG1-211ENST00000596457 TTC22Q5TAA0 569 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 SKAP1Q86WV1 359 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 DYNLL2Q96FJ2 89 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 FAM227BQ96M60 508 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 DNAJC18Q9H819 358 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 SERPINB13Q9UIV8 391 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 ZHX2Q9Y6X8 837 aa13.29□□□□□ -0.28
LIG1-211ENST00000596457 DDX60LQ5H9U9 1706 aaKnown RBP13.29□□□□□ -0.28
LIG1-211ENST00000596457 CCL15-CCL14A0A0B4J2E2 113 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 GSG1L2A8MUP6 293 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 MINDY4BA8MYZ0 360 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 PATL2C9JE40 543 aaKnown RBP13.28□□□□□ -0.28
LIG1-211ENST00000596457 IRF6O14896 467 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 PTPRAP18433 802 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 GNAT2P19087 354 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 SDSP20132 328 aa13.28□□□□□ -0.28
LIG1-211ENST00000596457 CAP2P40123 477 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms