RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 HSPA6P17066 643 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 GNAT2P19087 354 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 INPP5BP32019 993 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 PRKG1Q13976 671 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 TATDN1Q6P1N9 297 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 FOXP4Q8IVH2 680 aaPredicted RBP12.68□□□□□ -0.38
LIG1-210ENST00000596332 DNAJC5GQ8N7S2 189 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 CLMNQ96JQ2 1002 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 LSG1Q9H089 658 aaKnown RBP12.68□□□□□ -0.38
LIG1-210ENST00000596332 EHD4Q9H223 541 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 ZNF408Q9H9D4 720 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 CREBZFQ9NS37 354 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 DIAPH3Q9NSV4 1193 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 MCM9Q9NXL9 1143 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 PI4KBQ9UBF8 816 aa12.68□□□□□ -0.38
LIG1-210ENST00000596332 AK9Q5TCS8 1911 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 FAM155AB1AL88 458 aaPredicted RBP12.67□□□□□ -0.38
LIG1-210ENST00000596332 FGRP09769 529 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 SHMT1P34896 483 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 FKBP1BP68106 108 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 SLC44A5Q8NCS7 719 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 INCENPQ9NQS7 918 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 TAF6LQ9Y6J9 622 aa12.67□□□□□ -0.38
LIG1-210ENST00000596332 RAD50Q92878 1312 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 RASSF10A6NK89 507 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 GJA5P36382 358 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 MAP4K1Q92918 833 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 ZKSCAN4Q969J2 545 aaPredicted RBP12.66□□□□□ -0.38
LIG1-210ENST00000596332 DSCC1Q9BVC3 393 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.66□□□□□ -0.38
LIG1-210ENST00000596332 ANAPC4Q9UJX5 808 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 ANGEL1Q9UNK9 670 aaKnown RBP12.66□□□□□ -0.38
LIG1-210ENST00000596332 SNCAIPQ9Y6H5 919 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 MYH1P12882 1939 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 ROBO3Q96MS0 1386 aa12.66□□□□□ -0.38
LIG1-210ENST00000596332 BAZ2AQ9UIF9 1905 aaKnown RBP12.66□□□□□ -0.38
LIG1-210ENST00000596332 ZMYM6O95789 1325 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 CDC45O75419 566 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 GUCY1A2P33402 732 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 MAP3K9P80192 1104 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 COL9A3Q14050 684 aaPredicted RBP12.65□□□□□ -0.38
LIG1-210ENST00000596332 C16orf86Q6ZW13 317 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 TTC6Q86TZ1 520 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 ZSCAN29Q8IWY8 852 aaPredicted RBP12.65□□□□□ -0.38
LIG1-210ENST00000596332 C2orf69Q8N8R5 385 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 HHIPL1Q96JK4 782 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 ZIC5Q96T25 663 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIG1-210ENST00000596332 ZNF341Q9BYN7 854 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 HERC5Q9UII4 1024 aaKnown RBP12.65□□□□□ -0.38
LIG1-210ENST00000596332 SERPINB13Q9UIV8 391 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIG1-210ENST00000596332 NAV1Q8NEY1 1877 aa12.65□□□□□ -0.38
LIG1-210ENST00000596332 OTOFQ9HC10 1997 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 UNCXA6NJT0 531 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 PPP1R12BO60237 982 aaPredicted RBP12.64□□□□□ -0.39
LIG1-210ENST00000596332 POLR3DP05423 398 aaPredicted RBP12.64□□□□□ -0.39
LIG1-210ENST00000596332 CAP2P40123 477 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 CDK8P49336 464 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 HUNKP57058 714 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 PPARAQ07869 468 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 VGLL4Q14135 290 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 NOL9Q5SY16 702 aaKnown RBP12.64□□□□□ -0.39
LIG1-210ENST00000596332 SIAH1Q8IUQ4 282 aa12.64□□□□□ -0.39
LIG1-210ENST00000596332 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.64□□□□□ -0.39
LIG1-210ENST00000596332 ARPP21Q9UBL0 812 aaPredicted RBP12.64□□□□□ -0.39
LIG1-210ENST00000596332 SEC24BO95487 1268 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 APPP05067 770 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 RASA1P20936 1047 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 NF2P35240 595 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 CTDSPL2Q05D32 466 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 NECTIN1Q15223 517 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 C8orf34Q49A92 452 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 DCAF15Q66K64 600 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 ARMC9Q7Z3E5 817 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 CCDC84Q86UT8 332 aaPredicted RBP12.63□□□□□ -0.39
LIG1-210ENST00000596332 TBC1D10CQ8IV04 446 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 ANKRD13AQ8IZ07 590 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 WRNIP1Q96S55 665 aa12.63□□□□□ -0.39
LIG1-210ENST00000596332 CEP350Q5VT06 3117 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 MINDY4BA8MYZ0 360 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 CTNND1O60716 968 aaKnown RBP12.62□□□□□ -0.39
LIG1-210ENST00000596332 HLA-DOAP06340 250 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 CYP21A2P08686 494 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 IREB2P48200 963 aaKnown RBP12.62□□□□□ -0.39
LIG1-210ENST00000596332 RGMBQ6NW40 437 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 RASAL3Q86YV0 1011 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 RUFY2Q8WXA3 655 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 HOOK2Q96ED9 719 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 NAPBQ9H115 298 aa12.62□□□□□ -0.39
LIG1-210ENST00000596332 SPDYE5A6NIY4 337 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 SLC10A3P09131 477 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 AKR1B1P15121 316 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 PTPRAP18433 802 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 TDO2P48775 406 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 VEGFBP49765 207 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 MFAP1P55081 439 aaKnown RBP12.61□□□□□ -0.39
LIG1-210ENST00000596332 MOGSQ13724 837 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 DEFB115Q30KQ5 88 aa12.61□□□□□ -0.39
LIG1-210ENST00000596332 CYP4F22Q6NT55 531 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms