RNA–Protein interactions for RNA: ENST00000594973.5

SHKBP1-205, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,339 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-205ENST00000594973 NR1I2O75469 434 aa19.73■□□□□ 0.75
SHKBP1-205ENST00000594973 LIFRP42702 1097 aa19.73■□□□□ 0.75
SHKBP1-205ENST00000594973 SART3Q15020 963 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-205ENST00000594973 ZNF397Q8NF99 534 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-205ENST00000594973 CDKL5O76039 1030 aa19.72■□□□□ 0.75
SHKBP1-205ENST00000594973 SERPINB2P05120 415 aa19.72■□□□□ 0.75
SHKBP1-205ENST00000594973 SLC27A3Q5K4L6 730 aa19.72■□□□□ 0.75
SHKBP1-205ENST00000594973 CPLX2Q6PUV4 134 aaKnown RBP19.72■□□□□ 0.75
SHKBP1-205ENST00000594973 CCDC112Q8NEF3 446 aa19.72■□□□□ 0.75
SHKBP1-205ENST00000594973 ERICH2A1L162 156 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 WTAPQ15007 396 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 CKAP2LQ8IYA6 745 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 ALG1Q9BT22 464 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 PLCB2Q00722 1185 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 SYNE3Q6ZMZ3 975 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 FAM217BQ9NTX9 383 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 RCOR1Q9UKL0 485 aa19.71■□□□□ 0.75
SHKBP1-205ENST00000594973 UBE2Q2LH0YL09 131 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 PRDM1O75626 825 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 ST5P78524 1137 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 MAP3K11Q16584 847 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 UBAC1Q9BSL1 405 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 TNMDQ9H2S6 317 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 TIAM2Q8IVF5 1701 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 KIF28PB7ZC32 967 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 RANBP6O60518 1105 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 TNNT1P13805 278 aa19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 IARSP41252 1262 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-205ENST00000594973 CHD4Q14839 1912 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 IRS2Q9Y4H2 1338 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 ME1P48163 572 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 NTRK3Q16288 839 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 CCDC82Q8N4S0 544 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 SPC24Q8NBT2 197 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 XDHP47989 1333 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 PDS5AQ29RF7 1337 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 USP17L12C9JPN9 530 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 USP17L21D6R901 530 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 EVX2Q03828 476 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 DZIP1Q86YF9 867 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 ESR2Q92731 530 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 BRIP1Q9BX63 1249 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 SLC26A6Q9BXS9 759 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 DDX19AQ9NUU7 478 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 ANAPC4Q9UJX5 808 aa19.69■□□□□ 0.74
SHKBP1-205ENST00000594973 CCDC192P0DO97 292 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 PTGS1P23219 599 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 ATL3Q6DD88 541 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 CTR9Q6PD62 1173 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 CMTR1Q8N1G2 835 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 PROM2Q8N271 834 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 NUP133Q8WUM0 1156 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 LEMD3Q9Y2U8 911 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 GOLGB1Q14789 3259 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 GPSM2P81274 684 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 KIF23Q02241 960 aaPredicted RBP19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 TXNRD1Q16881 649 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 CCAR1Q8IX12 1150 aaKnown RBP19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 CLIC4Q9Y696 253 aa19.68■□□□□ 0.74
SHKBP1-205ENST00000594973 DDR1Q08345 913 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 SLC4A8Q2Y0W8 1093 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 UBR3Q6ZT12 1888 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 CRNKL1Q9BZJ0 848 aaKnown RBP19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 CLSTN2Q9H4D0 955 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 TNKSO95271 1327 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 CRY2Q49AN0 593 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 MYSM1Q5VVJ2 828 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 KRT40Q6A162 431 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 FAM200AQ8TCP9 573 aa19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 C16orf45Q96MC5 204 aaPredicted RBP19.67■□□□□ 0.74
SHKBP1-205ENST00000594973 SSRP1Q08945 709 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 GNL2Q13823 731 aaKnown RBP19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 RTN1Q16799 776 aa19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 BRAPQ7Z569 592 aa19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 GOLPH3LQ9H4A5 285 aa19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 DCP1AQ9NPI6 582 aaPredicted RBP19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 RTEL1Q9NZ71 1219 aa19.66■□□□□ 0.74
SHKBP1-205ENST00000594973 UFL1O94874 794 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 BAZ2AQ9UIF9 1905 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 MYH13Q9UKX3 1938 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 LDHBP07195 334 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 STK38Q15208 465 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 SF3A1Q15459 793 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 SPTY2D1Q68D10 685 aaPredicted RBP19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 ZNF804AQ7Z570 1209 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 ZNF654Q8IZM8 581 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 TMTC2Q8N394 836 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 RBM17Q96I25 401 aaKnown RBP19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 BRWD3Q6RI45 1802 aa19.65■□□□□ 0.74
SHKBP1-205ENST00000594973 CAPN2P17655 700 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 GUCY1A2P33402 732 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 TYRO3Q06418 890 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 TRIM29Q14134 588 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 GRIK5Q16478 980 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 PCDHA7Q9UN72 937 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 MYH15Q9Y2K3 1946 aa19.64■□□□□ 0.74
SHKBP1-205ENST00000594973 POLRMTO00411 1230 aaKnown RBP19.64■□□□□ 0.73
SHKBP1-205ENST00000594973 CYP2D6P10635 497 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms