RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 NDUFB9Q9Y6M9 179 aa21.51■■□□□ 1.03
SHKBP1-204ENST00000594862 PDE6AP16499 860 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 PTPRAP18433 802 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 USP5P45974 858 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 SLC9C2Q5TAH2 1124 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 FASTKD5Q7L8L6 764 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 FOXP4Q8IVH2 680 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 MAPKAPK5Q8IW41 473 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 FAM43AQ8N2R8 423 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 HAUS7Q99871 368 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 BCL11AQ9H165 835 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 ECHDC1Q9NTX5 307 aa21.5■■□□□ 1.03
SHKBP1-204ENST00000594862 BTBD19C9JJ37 291 aa21.49■■□□□ 1.03
SHKBP1-204ENST00000594862 CRACR2BQ8N4Y2 399 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-204ENST00000594862 MIGA1Q8NAN2 632 aa21.49■■□□□ 1.03
SHKBP1-204ENST00000594862 R3HDMLQ9H3Y0 253 aa21.49■■□□□ 1.03
SHKBP1-204ENST00000594862 GINM1Q9NU53 330 aa21.49■■□□□ 1.03
SHKBP1-204ENST00000594862 ZHX2Q9Y6X8 837 aa21.49■■□□□ 1.03
SHKBP1-204ENST00000594862 ATAD5Q96QE3 1844 aa21.48■■□□□ 1.03
SHKBP1-204ENST00000594862 MAGEB6P1A0A0J9YX57 407 aa21.48■■□□□ 1.03
SHKBP1-204ENST00000594862 DYNLL1P63167 89 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-204ENST00000594862 SP3Q02447 781 aa21.48■■□□□ 1.03
SHKBP1-204ENST00000594862 ZSCAN25Q6NSZ9 544 aa21.48■■□□□ 1.03
SHKBP1-204ENST00000594862 CRNKL1Q9BZJ0 848 aaKnown RBP21.48■■□□□ 1.03
SHKBP1-204ENST00000594862 A0A0G2JLL6 359 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 FBXO46Q6PJ61 603 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 PRRT2Q7Z6L0 340 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 METTL16Q86W50 562 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 RIOK1Q9BRS2 568 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 BOLA2Q9H3K6 86 aa21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 AS3MTQ9HBK9 375 aa21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 SIPA1L1O43166 1804 aa21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 ZNF532Q9HCE3 1301 aa21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 MYH1P12882 1939 aa21.47■■□□□ 1.03
SHKBP1-204ENST00000594862 PHIPQ8WWQ0 1821 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 TLR2O60603 784 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 CAP2P40123 477 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 TTC6Q86TZ1 520 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 CRBNQ96SW2 442 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 PARK7Q99497 189 aaKnown RBP21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 EHD4Q9H223 541 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 ZBTB47Q9UFB7 747 aaPredicted RBP21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 TAOK2Q9UL54 1235 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 SLC45A1Q9Y2W3 748 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 AFG3L2Q9Y4W6 797 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 PCDHB15Q9Y5E8 787 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 MYH7P12883 1935 aa21.46■■□□□ 1.03
SHKBP1-204ENST00000594862 NAV1Q8NEY1 1877 aa21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 FAM196BA6NMK8 535 aa21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 SMARCA5O60264 1052 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 ASNSP08243 561 aa21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 PALD1Q9ULE6 856 aa21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 DDX60LQ5H9U9 1706 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 PTPRFP10586 1907 aa21.45■■□□□ 1.02
SHKBP1-204ENST00000594862 PDHXO00330 501 aa21.44■■□□□ 1.02
SHKBP1-204ENST00000594862 KIF22Q14807 665 aa21.44■■□□□ 1.02
SHKBP1-204ENST00000594862 UBE3CQ15386 1083 aa21.44■■□□□ 1.02
SHKBP1-204ENST00000594862 TRIM17Q9Y577 477 aa21.44■■□□□ 1.02
SHKBP1-204ENST00000594862 TTC41PQ6P2S7 1318 aa21.44■■□□□ 1.02
SHKBP1-204ENST00000594862 TCRBV5S4A2TA0A5A2 114 aa21.43■■□□□ 1.02
SHKBP1-204ENST00000594862 USP17L5A8MUK1 530 aa21.43■■□□□ 1.02
SHKBP1-204ENST00000594862 ADD2P35612 726 aa21.43■■□□□ 1.02
SHKBP1-204ENST00000594862 MOGSQ13724 837 aa21.43■■□□□ 1.02
SHKBP1-204ENST00000594862 SAP30BPQ9UHR5 308 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-204ENST00000594862 SERPINB13Q9UIV8 391 aa21.43■■□□□ 1.02
SHKBP1-204ENST00000594862 TRIM75PA6NK02 468 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 ERC2O15083 957 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 GNRH1P01148 92 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 LRRFIP1Q32MZ4 808 aaKnown RBP21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 OTOP1Q7RTM1 612 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 PROCA1Q8NCQ7 364 aaPredicted RBP21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 ZNF280CQ8ND82 737 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 CD99L2Q8TCZ2 262 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 GCC1Q96CN9 775 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 EFCC1Q9HA90 598 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 HPS5Q9UPZ3 1129 aa21.42■■□□□ 1.02
SHKBP1-204ENST00000594862 LOC285556D6RIA3 1793 aa21.41■■□□□ 1.02
SHKBP1-204ENST00000594862 PABPC4Q13310 644 aaKnown RBP eCLIP21.41■■□□□ 1.021e-9■■■■□ 22.8
SHKBP1-204ENST00000594862 HDAC1Q13547 482 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-204ENST00000594862 GADL1Q6ZQY3 521 aa21.41■■□□□ 1.02
SHKBP1-204ENST00000594862 EDC3Q96F86 508 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-204ENST00000594862 DDRGK1Q96HY6 314 aa21.41■■□□□ 1.02
SHKBP1-204ENST00000594862 PNMA3Q9UL41 463 aa21.41■■□□□ 1.02
SHKBP1-204ENST00000594862 SLURP2P0DP57 97 aa21.4■■□□□ 1.02
SHKBP1-204ENST00000594862 GPAT2Q6NUI2 795 aa21.4■■□□□ 1.02
SHKBP1-204ENST00000594862 AMOTL1Q8IY63 956 aa21.4■■□□□ 1.02
SHKBP1-204ENST00000594862 WDR18Q9BV38 432 aa21.4■■□□□ 1.02
SHKBP1-204ENST00000594862 DNAJC18Q9H819 358 aa21.4■■□□□ 1.02
SHKBP1-204ENST00000594862 AGTPBP1Q9UPW5 1226 aa21.4■■□□□ 1.02
SHKBP1-204ENST00000594862 ADGRA2Q96PE1 1338 aa21.39■■□□□ 1.01
SHKBP1-204ENST00000594862 POLR3DP05423 398 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-204ENST00000594862 SPP2Q13103 211 aa21.39■■□□□ 1.01
SHKBP1-204ENST00000594862 ATP8A2Q9NTI2 1148 aa21.39■■□□□ 1.01
SHKBP1-204ENST00000594862 GLRX3O76003 335 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-204ENST00000594862 MBD4O95243 580 aa21.38■■□□□ 1.01
SHKBP1-204ENST00000594862 ZFYP08048 801 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-204ENST00000594862 PRMT2P55345 433 aa21.38■■□□□ 1.01
SHKBP1-204ENST00000594862 LACTBP83111 547 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-204ENST00000594862 TATDN1Q6P1N9 297 aa21.38■■□□□ 1.01
SHKBP1-204ENST00000594862 C17orf99Q6UX52 265 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 161.2 ms