RNA–Protein interactions for RNA: ENST00000592017.5

CLIP3-205, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 5

Gene CLIP3, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-205ENST00000592017 GPAT2Q6NUI2 795 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 ANKRD23Q86SG2 305 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 EFCC1Q9HA90 598 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 PICK1Q9NRD5 415 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 ECHDC1Q9NTX5 307 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 PAG1Q9NWQ8 432 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.9■□□□□ 0.3
CLIP3-205ENST00000592017 HTTP42858 3142 aa16.9■□□□□ 0.3
CLIP3-205ENST00000592017 IGSF3O75054 1194 aa16.89■□□□□ 0.29
CLIP3-205ENST00000592017 PLCG2P16885 1265 aa16.89■□□□□ 0.29
CLIP3-205ENST00000592017 DYNLL1P63167 89 aaKnown RBP16.89■□□□□ 0.29
CLIP3-205ENST00000592017 MLLT1Q03111 559 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-205ENST00000592017 HDAC1Q13547 482 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-205ENST00000592017 AAMPQ13685 434 aa16.89■□□□□ 0.29
CLIP3-205ENST00000592017 CCDC84Q86UT8 332 aaPredicted RBP16.89■□□□□ 0.29
CLIP3-205ENST00000592017 HAUS7Q99871 368 aa16.89■□□□□ 0.29
CLIP3-205ENST00000592017 AFG3L2Q9Y4W6 797 aa16.89■□□□□ 0.29
CLIP3-205ENST00000592017 LAMB1P07942 1786 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 PDHXO00330 501 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 SLC9C2Q5TAH2 1124 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 C17orf99Q6UX52 265 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 MAPKAPK5Q8IW41 473 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 TGFBRAP1Q8WUH2 860 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.88■□□□□ 0.29
CLIP3-205ENST00000592017 PTPN22Q9Y2R2 807 aa16.88■□□□□ 0.29
CLIP3-205ENST00000592017 A0A0G2JLL6 359 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-205ENST00000592017 PDE6AP16499 860 aa16.87■□□□□ 0.29
CLIP3-205ENST00000592017 ANKRD45Q5TZF3 282 aa16.87■□□□□ 0.29
CLIP3-205ENST00000592017 PRRT2Q7Z6L0 340 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-205ENST00000592017 GCC1Q96CN9 775 aa16.87■□□□□ 0.29
CLIP3-205ENST00000592017 ARHGAP39Q9C0H5 1083 aa16.87■□□□□ 0.29
CLIP3-205ENST00000592017 CPA4Q9UI42 421 aa16.87■□□□□ 0.29
CLIP3-205ENST00000592017 COL2A1P02458 1487 aaPredicted RBP16.86■□□□□ 0.29
CLIP3-205ENST00000592017 OTUD7AQ8TE49 926 aaPredicted RBP16.86■□□□□ 0.29
CLIP3-205ENST00000592017 PI4KBQ9UBF8 816 aa16.86■□□□□ 0.29
CLIP3-205ENST00000592017 FLT1P17948 1338 aa16.86■□□□□ 0.29
CLIP3-205ENST00000592017 ADGRA2Q96PE1 1338 aa16.86■□□□□ 0.29
CLIP3-205ENST00000592017 ZNF532Q9HCE3 1301 aa16.86■□□□□ 0.29
CLIP3-205ENST00000592017 MAGEB6P1A0A0J9YX57 407 aa16.85■□□□□ 0.29
CLIP3-205ENST00000592017 USP5P45974 858 aa16.85■□□□□ 0.29
CLIP3-205ENST00000592017 SLC4A8Q2Y0W8 1093 aa16.85■□□□□ 0.29
CLIP3-205ENST00000592017 FASTKD5Q7L8L6 764 aaKnown RBP16.85■□□□□ 0.29
CLIP3-205ENST00000592017 METTL16Q86W50 562 aaKnown RBP16.85■□□□□ 0.29
CLIP3-205ENST00000592017 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.85■□□□□ 0.29
CLIP3-205ENST00000592017 DHX36Q9H2U1 1008 aaKnown RBP16.85■□□□□ 0.29
CLIP3-205ENST00000592017 RWDD1Q9H446 243 aaPredicted RBP16.85■□□□□ 0.29
CLIP3-205ENST00000592017 SAP30BPQ9UHR5 308 aaKnown RBP16.85■□□□□ 0.29
CLIP3-205ENST00000592017 PALD1Q9ULE6 856 aa16.85■□□□□ 0.29
CLIP3-205ENST00000592017 DOCK2Q92608 1830 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 TRIM75PA6NK02 468 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 CYP2C8P10632 490 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 CTGFP29279 349 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 CAP2P40123 477 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 JAG1P78504 1218 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 LACTBP83111 547 aaPredicted RBP16.84■□□□□ 0.29
CLIP3-205ENST00000592017 SLFNL1Q499Z3 407 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 TMED8Q6PL24 325 aaPredicted RBP16.84■□□□□ 0.29
CLIP3-205ENST00000592017 DNAJC18Q9H819 358 aa16.84■□□□□ 0.29
CLIP3-205ENST00000592017 HERC5Q9UII4 1024 aaKnown RBP16.84■□□□□ 0.29
CLIP3-205ENST00000592017 MYO5AQ9Y4I1 1855 aaKnown RBP16.84■□□□□ 0.29
CLIP3-205ENST00000592017 ECM2O94769 699 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-205ENST00000592017 MX1P20591 662 aa16.83■□□□□ 0.28
CLIP3-205ENST00000592017 B4GALNT3Q6L9W6 998 aa16.83■□□□□ 0.28
CLIP3-205ENST00000592017 GADL1Q6ZQY3 521 aa16.83■□□□□ 0.28
CLIP3-205ENST00000592017 CERS3Q8IU89 383 aa16.83■□□□□ 0.28
CLIP3-205ENST00000592017 FOXP4Q8IVH2 680 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-205ENST00000592017 ARMC5Q96C12 935 aa16.83■□□□□ 0.28
CLIP3-205ENST00000592017 TTC41PQ6P2S7 1318 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 TCRBV5S4A2TA0A5A2 114 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 ERC2O15083 957 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 IGHDP01880 384 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 CHGBP05060 677 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 ADD2P35612 726 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 SPP2Q13103 211 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 ARHGEF6Q15052 776 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 SHROOM1Q2M3G4 852 aaPredicted RBP16.82■□□□□ 0.28
CLIP3-205ENST00000592017 PARK7Q99497 189 aaKnown RBP16.82■□□□□ 0.28
CLIP3-205ENST00000592017 RIOK1Q9BRS2 568 aaKnown RBP16.82■□□□□ 0.28
CLIP3-205ENST00000592017 LNPKQ9C0E8 428 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 PTCH2Q9Y6C5 1203 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 AK9Q5TCS8 1911 aa16.82■□□□□ 0.28
CLIP3-205ENST00000592017 MBD4O95243 580 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 BCRP11274 1271 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 ZSCAN25Q6NSZ9 544 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 LCORLQ8N3X6 602 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 CRACR2BQ8N4Y2 399 aaPredicted RBP16.81■□□□□ 0.28
CLIP3-205ENST00000592017 ZNF280CQ8ND82 737 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 TRIM47Q96LD4 638 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 TRIM34Q9BYJ4 488 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 CRNKL1Q9BZJ0 848 aaKnown RBP16.81■□□□□ 0.28
CLIP3-205ENST00000592017 ARMT1Q9H993 441 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 SLC45A1Q9Y2W3 748 aa16.81■□□□□ 0.28
CLIP3-205ENST00000592017 USP17L5A8MUK1 530 aa16.8■□□□□ 0.28
CLIP3-205ENST00000592017 GLRX3O76003 335 aaKnown RBP16.8■□□□□ 0.28
CLIP3-205ENST00000592017 HLA-DOAP06340 250 aa16.8■□□□□ 0.28
CLIP3-205ENST00000592017 PSMC4P43686 418 aa16.8■□□□□ 0.28
CLIP3-205ENST00000592017 KIF22Q14807 665 aa16.8■□□□□ 0.28
CLIP3-205ENST00000592017 TREML2Q5T2D2 321 aa16.8■□□□□ 0.28
CLIP3-205ENST00000592017 PI4K2BQ8TCG2 481 aa16.8■□□□□ 0.28
CLIP3-205ENST00000592017 CENPFP49454 3210 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms