RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 POTEIP0CG38 1075 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 POTEJP0CG39 1038 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 ME1P48163 572 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 TDO2P48775 406 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 RASGRF1Q13972 1273 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 DHX8Q14562 1220 aaKnown RBP12.32□□□□□ -0.44
ZNF540-208ENST00000589857 STK38Q15208 465 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 STX1AQ16623 288 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 SLFNL1Q499Z3 407 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 PI16Q6UXB8 463 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 MFSD6Q6ZSS7 791 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 CCAR1Q8IX12 1150 aaKnown RBP12.32□□□□□ -0.44
ZNF540-208ENST00000589857 MAGEB6Q8N7X4 407 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 MRPS27Q92552 414 aaKnown RBP12.32□□□□□ -0.44
ZNF540-208ENST00000589857 NCOA5Q9HCD5 579 aaKnown RBP12.32□□□□□ -0.44
ZNF540-208ENST00000589857 BSDC1Q9NW68 430 aaPredicted RBP12.32□□□□□ -0.44
ZNF540-208ENST00000589857 LRP2BPQ9P2M1 347 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 DENND2AQ9ULE3 1009 aa12.32□□□□□ -0.44
ZNF540-208ENST00000589857 NID2Q14112 1375 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 GOLGA8AA7E2F4 631 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 MBD4O95243 580 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 IARSP41252 1262 aaKnown RBP12.31□□□□□ -0.44
ZNF540-208ENST00000589857 ANTXR2P58335 489 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 CHRNDQ07001 517 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 GNL2Q13823 731 aaKnown RBP12.31□□□□□ -0.44
ZNF540-208ENST00000589857 COL9A3Q14050 684 aaPredicted RBP12.31□□□□□ -0.44
ZNF540-208ENST00000589857 TMEM67Q5HYA8 995 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 SLC10A5Q5PT55 438 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 AKNAD1Q5T1N1 836 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 ADALQ6DHV7 355 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 FAM173BQ6P4H8 233 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 PAXIP1Q6ZW49 1069 aaPredicted RBP12.31□□□□□ -0.44
ZNF540-208ENST00000589857 IFNL3Q8IZI9 196 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 CCDC24Q8N4L8 307 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 STAG1Q8WVM7 1258 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 ABHD8Q96I13 439 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 NOL10Q9BSC4 688 aaKnown RBP12.31□□□□□ -0.44
ZNF540-208ENST00000589857 ANKRD2Q9GZV1 360 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 ANO10Q9NW15 660 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 PCDH10Q9P2E7 1040 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 SLC12A7Q9Y666 1083 aa12.31□□□□□ -0.44
ZNF540-208ENST00000589857 GOLGA6L19H0YKK7 550 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 CA12O43570 354 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 SLC34A2O95436 690 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 MLLT1Q03111 559 aaPredicted RBP12.3□□□□□ -0.44
ZNF540-208ENST00000589857 SAFBQ15424 915 aaKnown RBP eCLIP12.3□□□□□ -0.44
ZNF540-208ENST00000589857 TPRNQ4KMQ1 711 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 APOA5Q6Q788 366 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 CHST3Q7LGC8 479 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 VPS37DQ86XT2 251 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 TBC1D10CQ8IV04 446 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 TRIM22Q8IYM9 498 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 TDRD7Q8NHU6 1098 aaKnown RBP12.3□□□□□ -0.44
ZNF540-208ENST00000589857 C7orf43Q8WVR3 580 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 PGBD1Q96JS3 809 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 PSMD1Q99460 953 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 ZNF277Q9NRM2 450 aaPredicted RBP12.3□□□□□ -0.44
ZNF540-208ENST00000589857 HPS5Q9UPZ3 1129 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 MRVI1Q9Y6F6 885 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 ZNF804BA4D1E1 1349 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 LAMB2P55268 1798 aa12.3□□□□□ -0.44
ZNF540-208ENST00000589857 MYH3P11055 1940 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 KLRG2A4D1S0 409 aaPredicted RBP12.29□□□□□ -0.44
ZNF540-208ENST00000589857 FZD9O00144 591 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 IFIT3O14879 490 aaKnown RBP12.29□□□□□ -0.44
ZNF540-208ENST00000589857 NR1I2O75469 434 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 FDPSP14324 419 aaKnown RBP12.29□□□□□ -0.44
ZNF540-208ENST00000589857 ADD1P35611 737 aaKnown RBP12.29□□□□□ -0.44
ZNF540-208ENST00000589857 TPM4P67936 248 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 SSRP1Q08945 709 aaKnown RBP12.29□□□□□ -0.44
ZNF540-208ENST00000589857 MYSM1Q5VVJ2 828 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 CEP57L1Q8IYX8 460 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 FSIP1Q8NA03 581 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 HELBQ8NG08 1087 aaPredicted RBP12.29□□□□□ -0.44
ZNF540-208ENST00000589857 USP28Q96RU2 1077 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 ALG1Q9BT22 464 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 SEC31BQ9NQW1 1179 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 SLC4A4Q9Y6R1 1079 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 SCN4AP35499 1836 aa12.29□□□□□ -0.44
ZNF540-208ENST00000589857 NUP98P52948 1817 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 FAM177BA6PVY3 158 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 B4E1Z4 1266 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 SPTLC2O15270 562 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 SLC3A2P08195 630 aaKnown RBP12.28□□□□□ -0.44
ZNF540-208ENST00000589857 HSPA8P11142 646 aaKnown RBP12.28□□□□□ -0.44
ZNF540-208ENST00000589857 XBP1P17861 261 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 CYP7A1P22680 504 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 CDC25BP30305 580 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 ZNF165P49910 485 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 PLCB2Q00722 1185 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 KIF23Q02241 960 aaPredicted RBP12.28□□□□□ -0.44
ZNF540-208ENST00000589857 WTAPQ15007 396 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 CAMK4Q16566 473 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 ANO6Q4KMQ2 910 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 MAP1SQ66K74 1059 aaPredicted RBP12.28□□□□□ -0.44
ZNF540-208ENST00000589857 USP50Q70EL3 339 aaPredicted RBP12.28□□□□□ -0.44
ZNF540-208ENST00000589857 LINC00301Q8NCQ3 95 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 ESR2Q92731 530 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 NLRP3Q96P20 1036 aa12.28□□□□□ -0.44
ZNF540-208ENST00000589857 UBAC1Q9BSL1 405 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms