RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	APOA5	Q6Q788	366 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	TTLL6	Q8N841	843 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	DAGLA	Q9Y4D2	1042 aa		18	■□□□□ 0.47
DDX39A-209	ENST00000589318	USP17L8	P0C7I0	530 aa		17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	PC	P11498	1178 aa	Known RBP	17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	PDC	P20941	246 aa		17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	CERS3	Q8IU89	383 aa		17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	TOMM22	Q9NS69	142 aa		17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	BRCA1	P38398	1863 aa	Known RBP	17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	PSME4	Q14997	1843 aa		17.99	■□□□□ 0.47
DDX39A-209	ENST00000589318	IFIT3	O14879	490 aa	Known RBP	17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	KIAA2012	Q0VF49	1180 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	CDC37L1	Q7L3B6	337 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	ILDR1	Q86SU0	546 aa	Predicted RBP	17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	RAB11FIP4	Q86YS3	637 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	SLF2	Q8IX21	1173 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	TGFBRAP1	Q8WUH2	860 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	FBXW7	Q969H0	707 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	DDX11	Q96FC9	970 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	NOL10	Q9BSC4	688 aa	Known RBP	17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	LMBRD1	Q9NUN5	540 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	MCM9	Q9NXL9	1143 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	MYH1	P12882	1939 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	ROBO3	Q96MS0	1386 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	ORC4	O43929	436 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	ECE2	O60344	883 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	PDIA4	P13667	645 aa	Known RBP	17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	USP5	P45974	858 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	AOC3	Q16853	763 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	C12orf60	Q5U649	245 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	ESR2	Q92731	530 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	ZKSCAN3	Q9BRR0	538 aa		17.98	■□□□□ 0.47
DDX39A-209	ENST00000589318	VPS37C	A5D8V6	355 aa	Predicted RBP	17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318		G3V3G9	751 aa		17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	PRDM1	O75626	825 aa		17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	FDPS	P14324	419 aa	Known RBP	17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	HMGN5	P82970	282 aa	Known RBP	17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	SEC23A	Q15436	765 aa		17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	DCAF8	Q5TAQ9	597 aa		17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	MTFR1L	Q9H019	292 aa		17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	ATF5	Q9Y2D1	282 aa	Predicted RBP	17.97	■□□□□ 0.47
DDX39A-209	ENST00000589318	NID2	Q14112	1375 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	ECM29	Q5VYK3	1845 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	PLCG2	P16885	1265 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	DACT2	Q5SW24	774 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	TAF3	Q5VWG9	929 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	PRIMPOL	Q96LW4	560 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	TTF2	Q9UNY4	1162 aa	Known RBP	17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318		F8W031	263 aa	Predicted RBP	17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	PPFIA3	O75145	1194 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	LETM1	O95202	739 aa	Predicted RBP	17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	STRIP1	Q5VSL9	837 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	MAPKAPK5	Q8IW41	473 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	TEX11	Q8IYF3	940 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	CHMP4C	Q96CF2	233 aa		17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	FAM217B	Q9NTX9	383 aa	Predicted RBP	17.96	■□□□□ 0.47
DDX39A-209	ENST00000589318	RXRA	P19793	462 aa		17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	CDC27	P30260	824 aa		17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	METAP2	P50579	478 aa	Known RBP eCLIP	17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	FKBP1A	P62942	108 aa	Known RBP	17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	SART3	Q15020	963 aa	Known RBP	17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	CCDC93	Q567U6	631 aa		17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	FOXD4L3	Q6VB84	417 aa	Predicted RBP	17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	SUPT20H	Q8NEM7	779 aa		17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	TNKS	O95271	1327 aa		17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	FLT1	P17948	1338 aa		17.95	■□□□□ 0.46
DDX39A-209	ENST00000589318	COL4A5	P29400	1685 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	ZBTB43	O43298	467 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	DHX16	O60231	1041 aa	Known RBP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	ADD1	P35611	737 aa	Known RBP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	WTAP	Q15007	396 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	R3HDM1	Q15032	1099 aa	Known RBP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	SLC4A8	Q2Y0W8	1093 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	GRIPAP1	Q4V328	841 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	MICU3	Q86XE3	530 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	UPF1	Q92900	1129 aa	Known RBP eCLIP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	SGIP1	Q9BQI5	828 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	MYL10	Q9BUA6	226 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	YDJC	A8MPS7	323 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	RANBP6	O60518	1105 aa	Known RBP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	SCNN1D	P51172	638 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	PLCD1	P51178	756 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	TGFB2	P61812	414 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	ZSCAN23	Q3MJ62	389 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	NFXL1	Q6ZNB6	911 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	ENAH	Q8N8S7	591 aa	Predicted RBP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	FAM184A	Q8NB25	1140 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	MYRIP	Q8NFW9	859 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	PSMD1	Q99460	953 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	UBAC1	Q9BSL1	405 aa		17.94	■□□□□ 0.46
DDX39A-209	ENST00000589318	CCDC69	A6NI79	296 aa		17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	PRPF40A	O75400	957 aa	Known RBP	17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	SLC3A2	P08195	630 aa	Known RBP	17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	NTRK3	Q16288	839 aa		17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	HHIPL2	Q6UWX4	724 aa		17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	RTKN2	Q8IZC4	609 aa		17.93	■□□□□ 0.46
DDX39A-209	ENST00000589318	DYNLL2	Q96FJ2	89 aa		17.93	■□□□□ 0.46

Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms