RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 MRPL14Q6P1L8 145 aaKnown RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 ATG9AQ7Z3C6 839 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 AACSQ86V21 672 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 ZNF784Q8NCA9 323 aaPredicted RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 CNKSR1Q969H4 720 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 KIFC2Q96AC6 838 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 CRAMP1Q96RY5 1269 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 ANKRD2Q9GZV1 360 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 CYLDQ9NQC7 956 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 BSDC1Q9NW68 430 aaPredicted RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 DACH1Q9UI36 760 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 AKAP2Q9Y2D5 859 aa6.5□□□□□ -1.37
LIG3-210ENST00000588109 COL11A2P13942 1736 aaPredicted RBP6.5□□□□□ -1.37
LIG3-210ENST00000588109 TAF1P21675 1872 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 A0A0G2JLW4 131 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 TAF5LO75529 589 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 PDE8BO95263 885 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 BMP1P13497 986 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 DPEP1P16444 411 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 TGFB2P61812 414 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 CHRNDQ07001 517 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 CBLBQ13191 982 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 ATP2B3Q16720 1220 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 TNNI3KQ59H18 835 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 GORABQ5T7V8 394 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 TMC4Q7Z404 712 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 SKAP1Q86WV1 359 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 C16orf71Q8IYS4 520 aaPredicted RBP6.49□□□□□ -1.37
LIG3-210ENST00000588109 GPATCH3Q96I76 525 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 NEUROD6Q96NK8 337 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 ZMYND15Q9H091 742 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 ANKIB1Q9P2G1 1089 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 MINPP1Q9UNW1 487 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 DOLKQ9UPQ8 538 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 RIPOR2Q9Y4F9 1068 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 CD2APQ9Y5K6 639 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 FPGT-TNNI3KV9GXZ4 949 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 COL4A1P02462 1669 aa6.49□□□□□ -1.37
LIG3-210ENST00000588109 CACNA1SQ13698 1873 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 A0A1B0GUL7 405 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 LCE2BO14633 110 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 SLC5A1P13866 664 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 MX1P20591 662 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 USP4Q13107 963 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 PUM3Q15397 648 aaKnown RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 CC2D2BQ6DHV5 1058 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 PRPF40BQ6NWY9 871 aaKnown RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 MEIOBQ8N635 442 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 TTLL6Q8N841 843 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 EAF2Q96CJ1 260 aaPredicted RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 CALR3Q96L12 384 aaKnown RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 PURBQ96QR8 312 aaKnown RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 CCDC8Q9H0W5 538 aaPredicted RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 ALG2Q9H553 416 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 GPR108Q9NPR9 543 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 GMPR2Q9P2T1 348 aaKnown RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 WWC3Q9ULE0 1092 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 NSFL1CQ9UNZ2 370 aaKnown RBP6.48□□□□□ -1.37
LIG3-210ENST00000588109 ATP6V0A2Q9Y487 856 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 ZNF609O15014 1411 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 KIF13BQ9NQT8 1826 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 XDHP47989 1333 aa6.48□□□□□ -1.37
LIG3-210ENST00000588109 DLEC1Q9Y238 1755 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 POM121CA8CG34 1229 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 IFIT1P09914 478 aaKnown RBP6.47□□□□□ -1.37
LIG3-210ENST00000588109 TIMM10P62072 90 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 RELBQ01201 579 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 MAP7D1Q3KQU3 841 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 OXLD1Q5BKU9 147 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 CCDC158Q5M9N0 1113 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 DPP8Q6V1X1 898 aaPredicted RBP6.47□□□□□ -1.37
LIG3-210ENST00000588109 TRIM46Q7Z4K8 759 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 SP8Q8IXZ3 490 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 LINC00528Q8N1L1 170 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 VGLL2Q8N8G2 317 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 OTUD7AQ8TE49 926 aaPredicted RBP6.47□□□□□ -1.37
LIG3-210ENST00000588109 LPIN2Q92539 896 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 ZFP42Q96MM3 310 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 DBNDD2Q9BQY9 259 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 ECHDC1Q9NTX5 307 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 TLR7Q9NYK1 1049 aaKnown RBP6.47□□□□□ -1.37
LIG3-210ENST00000588109 PIM2Q9P1W9 311 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 DBNLQ9UJU6 430 aaKnown RBP6.47□□□□□ -1.37
LIG3-210ENST00000588109 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.47□□□□□ -1.37
LIG3-210ENST00000588109 ZNF804BA4D1E1 1349 aa6.47□□□□□ -1.37
LIG3-210ENST00000588109 SNAP23O00161 211 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 ERC2O15083 957 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 C21orf2O43822 256 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 TRAK2O60296 914 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 UFL1O94874 794 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 ADH1AP07327 375 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 SKIP12755 728 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 ATP2B4P23634 1241 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 ADORA1P30542 326 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 PDE1AP54750 535 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 GPSM2P81274 684 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 UBE4AQ14139 1066 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 CAVIN4Q5BKX8 364 aa6.46□□□□□ -1.38
LIG3-210ENST00000588109 DALRD3Q5D0E6 543 aaKnown RBP6.46□□□□□ -1.38
LIG3-210ENST00000588109 TTC39AQ5SRH9 613 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms