RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 AS3MTQ9HBK9 375 aa13.13□□□□□ -0.31
CLIP3-203ENST00000586457 TTC41PQ6P2S7 1318 aa13.13□□□□□ -0.31
CLIP3-203ENST00000586457 TESPA1A2RU30 521 aaPredicted RBP13.12□□□□□ -0.31
CLIP3-203ENST00000586457 FAM196BA6NMK8 535 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 PHF20L1A8MW92 1017 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 IGF2BP3O00425 579 aaKnown RBP eCLIP13.12□□□□□ -0.31
CLIP3-203ENST00000586457 CXCL11O14625 94 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 GLRX3O76003 335 aaKnown RBP13.12□□□□□ -0.31
CLIP3-203ENST00000586457 PTPRAP18433 802 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 MAP3K10Q02779 954 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 KIF22Q14807 665 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 B4GALNT3Q6L9W6 998 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 GADL1Q6ZQY3 521 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 EXOC6Q8TAG9 804 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 ZNF296Q8WUU4 475 aaPredicted RBP13.12□□□□□ -0.31
CLIP3-203ENST00000586457 MS4A4AQ96JQ5 239 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 MCM9Q9NXL9 1143 aa13.12□□□□□ -0.31
CLIP3-203ENST00000586457 TRIM75PA6NK02 468 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 ZFYP08048 801 aaPredicted RBP13.11□□□□□ -0.31
CLIP3-203ENST00000586457 MX1P20591 662 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 ADD2P35612 726 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 CRHR2Q13324 411 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 UBE3CQ15386 1083 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 CTU1Q7Z7A3 348 aaKnown RBP13.11□□□□□ -0.31
CLIP3-203ENST00000586457 BRI3BPQ8WY22 251 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 ERO1AQ96HE7 468 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 PTPN18Q99952 460 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 TBC1D2Q9BYX2 928 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 ZCCHC17Q9NP64 241 aaKnown RBP13.11□□□□□ -0.31
CLIP3-203ENST00000586457 CABP5Q9NP86 173 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 MAST2Q6P0Q8 1798 aa13.11□□□□□ -0.31
CLIP3-203ENST00000586457 COL2A1P02458 1487 aaPredicted RBP13.1□□□□□ -0.31
CLIP3-203ENST00000586457 RFX7Q2KHR2 1363 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 USP17L5A8MUK1 530 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 MBD4O95243 580 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 ASNSP08243 561 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 CAP2P40123 477 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 PKN2Q16513 984 aaKnown RBP13.1□□□□□ -0.31
CLIP3-203ENST00000586457 NOM1Q5C9Z4 860 aaKnown RBP13.1□□□□□ -0.31
CLIP3-203ENST00000586457 TSHZ3Q63HK5 1081 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 FSD1Q9BTV5 496 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 CFHR5Q9BXR6 569 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 MCOLN1Q9GZU1 580 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 ARMT1Q9H993 441 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 SERPINB13Q9UIV8 391 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 SLC4A4Q9Y6R1 1079 aa13.1□□□□□ -0.31
CLIP3-203ENST00000586457 DOCK2Q92608 1830 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 CCDC85CA6NKD9 419 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 BTBD19C9JJ37 291 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 PDHXO00330 501 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 APPP05067 770 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 SP3Q02447 781 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 PABPC4Q13310 644 aaKnown RBP eCLIP13.09□□□□□ -0.31
CLIP3-203ENST00000586457 ANKRD23Q86SG2 305 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 FAM43AQ8N2R8 423 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 KBTBD3Q8NAB2 608 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 ZNF280CQ8ND82 737 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 ABHD8Q96I13 439 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 RIOK1Q9BRS2 568 aaKnown RBP13.09□□□□□ -0.31
CLIP3-203ENST00000586457 ATP8A2Q9NTI2 1148 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 GINM1Q9NU53 330 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 TMOD4Q9NZQ9 345 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 KCNH4Q9UQ05 1017 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 AFG3L2Q9Y4W6 797 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 CASP8AP2Q9UKL3 1982 aa13.09□□□□□ -0.31
CLIP3-203ENST00000586457 TCRBV5S4A2TA0A5A2 114 aa13.08□□□□□ -0.32
CLIP3-203ENST00000586457 MPHOSPH10O00566 681 aaKnown RBP13.08□□□□□ -0.32
CLIP3-203ENST00000586457 RNF113AO15541 343 aaKnown RBP13.08□□□□□ -0.32
CLIP3-203ENST00000586457 SLURP2P0DP57 97 aa13.08□□□□□ -0.32
CLIP3-203ENST00000586457 IRX6P78412 446 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-203ENST00000586457 SPP2Q13103 211 aa13.08□□□□□ -0.32
CLIP3-203ENST00000586457 CERKLQ49MI3 558 aaPredicted RBP13.08□□□□□ -0.32
CLIP3-203ENST00000586457 LCORLQ8N3X6 602 aa13.08□□□□□ -0.32
CLIP3-203ENST00000586457 SDR42E1Q8WUS8 393 aa13.08□□□□□ -0.32
CLIP3-203ENST00000586457 PARK7Q99497 189 aaKnown RBP13.08□□□□□ -0.32
CLIP3-203ENST00000586457 OTOFQ9HC10 1997 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 TRIM6-TRIM34B2RNG4 842 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 GDF11O95390 407 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 RAB3GAP1Q15042 981 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 SMCR8Q8TEV9 937 aaPredicted RBP13.07□□□□□ -0.32
CLIP3-203ENST00000586457 LNPKQ9C0E8 428 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 EHD4Q9H223 541 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 R3HDMLQ9H3Y0 253 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 PNMA3Q9UL41 463 aa13.07□□□□□ -0.32
CLIP3-203ENST00000586457 MYO5AQ9Y4I1 1855 aaKnown RBP13.07□□□□□ -0.32
CLIP3-203ENST00000586457 A0A0G2JLL6 359 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-203ENST00000586457 TLR2O60603 784 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 GNAT2P19087 354 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 OSBPP22059 807 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 ABCB5Q2M3G0 1257 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 PRRT2Q7Z6L0 340 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-203ENST00000586457 APPBP2Q92624 585 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 FEZ1Q99689 392 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 NACAP1Q9BZK3 213 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 EFCC1Q9HA90 598 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 DCP1AQ9NPI6 582 aaPredicted RBP13.06□□□□□ -0.32
CLIP3-203ENST00000586457 SWAP70Q9UH65 585 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 TRIM17Q9Y577 477 aa13.06□□□□□ -0.32
CLIP3-203ENST00000586457 C19orf81C9J6K1 198 aa13.05□□□□□ -0.32
CLIP3-203ENST00000586457 USP17L10C9JJH3 530 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms