RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SSRP1Q08945 709 aaKnown RBP16.53■□□□□ 0.24
LIG3-205ENST00000585941 NTRK3Q16288 839 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 MFSD14BQ5SR56 506 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 FAM173BQ6P4H8 233 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 SLC51AQ86UW1 340 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 TRIM22Q8IYM9 498 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 ZNF654Q8IZM8 581 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 MCM9Q9NXL9 1143 aa16.53■□□□□ 0.24
LIG3-205ENST00000585941 MKRN1Q9UHC7 482 aaKnown RBP16.53■□□□□ 0.24
LIG3-205ENST00000585941 TNKSO95271 1327 aa16.52■□□□□ 0.24
LIG3-205ENST00000585941 GPR75-ASB3A0A0A6YYF3 556 aa16.52■□□□□ 0.23
LIG3-205ENST00000585941 RAB11FIP4Q86YS3 637 aa16.52■□□□□ 0.23
LIG3-205ENST00000585941 RTFDC1Q9BY42 306 aaPredicted RBP16.52■□□□□ 0.23
LIG3-205ENST00000585941 FAM217BQ9NTX9 383 aaPredicted RBP16.52■□□□□ 0.23
LIG3-205ENST00000585941 TFIP11Q9UBB9 837 aaKnown RBP16.52■□□□□ 0.23
LIG3-205ENST00000585941 ROBO3Q96MS0 1386 aa16.52■□□□□ 0.23
LIG3-205ENST00000585941 SYCE3A1L190 88 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 FMNL1O95466 1100 aaPredicted RBP16.51■□□□□ 0.23
LIG3-205ENST00000585941 TRIM29Q14134 588 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 CCDC178Q5BJE1 867 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 IFIT1BQ5T764 474 aaKnown RBP16.51■□□□□ 0.23
LIG3-205ENST00000585941 C12orf60Q5U649 245 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 CATIPQ7Z7H3 387 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 C2CD5Q86YS7 1000 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 SH3RF3Q8TEJ3 882 aaPredicted RBP16.51■□□□□ 0.23
LIG3-205ENST00000585941 ZKSCAN3Q9BRR0 538 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 ALG1Q9BT22 464 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 ZNF287Q9HBT7 754 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 RCOR1Q9UKL0 485 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 GAKO14976 1311 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 CDK5RAP2Q96SN8 1893 aa16.51■□□□□ 0.23
LIG3-205ENST00000585941 CYP2D7A0A087X1C5 515 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 DIXDC1Q155Q3 683 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 EZH2Q15910 746 aaKnown RBP16.5■□□□□ 0.23
LIG3-205ENST00000585941 MSL1Q68DK7 614 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 STK11IPQ8N1F8 1099 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 ENAHQ8N8S7 591 aaPredicted RBP16.5■□□□□ 0.23
LIG3-205ENST00000585941 FANCBQ8NB91 859 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 RBM28Q9NW13 759 aaKnown RBP16.5■□□□□ 0.23
LIG3-205ENST00000585941 ECM29Q5VYK3 1845 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 DDAH1O94760 285 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 RXRAP19793 462 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 FOSBP53539 338 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 GUCY1B3Q02153 619 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 EN1Q05925 392 aaPredicted RBP16.5■□□□□ 0.23
LIG3-205ENST00000585941 SF3B2Q13435 895 aaKnown RBP16.5■□□□□ 0.23
LIG3-205ENST00000585941 ANP32BQ92688 251 aaKnown RBP16.5■□□□□ 0.23
LIG3-205ENST00000585941 CNKSR1Q969H4 720 aa16.5■□□□□ 0.23
LIG3-205ENST00000585941 ZNF622Q969S3 477 aaKnown RBP eCLIP16.5■□□□□ 0.23
LIG3-205ENST00000585941 BTDP43251 543 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 BAG6P46379 1132 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 GTF2IP78347 998 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 GRIK5Q16478 980 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 CCDC144CPQ8IYA2 1237 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 MYL10Q9BUA6 226 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 TSPY26PQ9H489 355 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 ANO8Q9HCE9 1232 aaPredicted RBP16.49■□□□□ 0.23
LIG3-205ENST00000585941 MYH6P13533 1939 aa16.49■□□□□ 0.23
LIG3-205ENST00000585941 FOCADQ5VW36 1801 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 G3V3G9 751 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 RIMBP2O15034 1052 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 DEXIO95424 95 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 DCAF8Q5TAQ9 597 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 CC2D2BQ6DHV5 1058 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 SLC26A6Q9BXS9 759 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 RTEL1Q9NZ71 1219 aa16.48■□□□□ 0.23
LIG3-205ENST00000585941 TSPY2A6NKD2 308 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 PPFIA3O75145 1194 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 PRDM1O75626 825 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 USP17L8P0C7I0 530 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 NASPP49321 788 aaPredicted RBP16.47■□□□□ 0.23
LIG3-205ENST00000585941 KIF23Q02241 960 aaPredicted RBP16.47■□□□□ 0.23
LIG3-205ENST00000585941 PODNQ7Z5L7 613 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 TEX11Q8IYF3 940 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 CRACR2BQ8N4Y2 399 aaPredicted RBP16.47■□□□□ 0.23
LIG3-205ENST00000585941 TGFBRAP1Q8WUH2 860 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 PHKBQ93100 1093 aa16.47■□□□□ 0.23
LIG3-205ENST00000585941 RNF26Q9BY78 433 aaPredicted RBP16.47■□□□□ 0.23
LIG3-205ENST00000585941 DDX19AQ9NUU7 478 aaKnown RBP16.47■□□□□ 0.23
LIG3-205ENST00000585941 DDX60LQ5H9U9 1706 aaKnown RBP16.47■□□□□ 0.23
LIG3-205ENST00000585941 YEATS4O95619 227 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 POLR3DP05423 398 aaPredicted RBP16.46■□□□□ 0.23
LIG3-205ENST00000585941 GRIPAP1Q4V328 841 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 KRT40Q6A162 431 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 NUP133Q8WUM0 1156 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 POLR3EQ9NVU0 708 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 MYH1P12882 1939 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 SMIM22K7EJ46 135 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 CYP2D6P10635 497 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 FKBP1AP62942 108 aaKnown RBP16.46■□□□□ 0.23
LIG3-205ENST00000585941 AKAP17AQ02040 695 aaKnown RBP16.46■□□□□ 0.23
LIG3-205ENST00000585941 SAFBQ15424 915 aaKnown RBP eCLIP16.46■□□□□ 0.23
LIG3-205ENST00000585941 MYSM1Q5VVJ2 828 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 DGKHQ86XP1 1220 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 BICD2Q8TD16 824 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 KCNG4Q8TDN1 519 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 ANKS1AQ92625 1134 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 USP28Q96RU2 1077 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 MKNK2Q9HBH9 465 aa16.46■□□□□ 0.23
LIG3-205ENST00000585941 TCP11L1Q9NUJ3 509 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms