RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 GPSM2P81274 684 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 DDR1Q08345 913 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 MAP3K11Q16584 847 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 MICU3Q86XE3 530 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 IQCA1Q86XH1 822 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 SLF2Q8IX21 1173 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 TRIM22Q8IYM9 498 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 FAM43AQ8N2R8 423 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 BICD2Q8TD16 824 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 ZNF384Q8TF68 577 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 ALG1Q9BT22 464 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 RTEL1Q9NZ71 1219 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 NAV1Q8NEY1 1877 aa13.1□□□□□ -0.31
LIG3-204ENST00000585740 CTAGE5O15320 804 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 FMNL1O95466 1100 aaPredicted RBP13.09□□□□□ -0.31
LIG3-204ENST00000585740 CCDC192P0DO97 292 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 IL1R1P14778 569 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 PRDX5P30044 214 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 PPP4CP60510 307 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 PDE4BQ07343 736 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 NTRK3Q16288 839 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 CTR9Q6PD62 1173 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 SP8Q8IXZ3 490 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 AMOTL1Q8IY63 956 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 KCNG4Q8TDN1 519 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 TBC1D22AQ8WUA7 517 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 RBM28Q9NW13 759 aaKnown RBP13.09□□□□□ -0.31
LIG3-204ENST00000585740 AATFQ9NY61 560 aaKnown RBP eCLIP13.09□□□□□ -0.31
LIG3-204ENST00000585740 TACC3Q9Y6A5 838 aa13.09□□□□□ -0.31
LIG3-204ENST00000585740 LTBP1Q14766 1721 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 PLCG2P16885 1265 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 CDC27P30260 824 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 GUCY1B3Q02153 619 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 KIF23Q02241 960 aaPredicted RBP13.08□□□□□ -0.32
LIG3-204ENST00000585740 SEC23AQ15436 765 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 CCDC178Q5BJE1 867 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 CCDC73Q6ZRK6 1079 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 TXNRD3Q86VQ6 643 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 RAB11FIP4Q86YS3 637 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 ZNF654Q8IZM8 581 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 PGBD1Q96JS3 809 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 USP28Q96RU2 1077 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 ZSCAN10Q96SZ4 725 aaPredicted RBP13.08□□□□□ -0.32
LIG3-204ENST00000585740 TNMDQ9H2S6 317 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 CLSTN2Q9H4D0 955 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 CD209Q9NNX6 404 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 DCP1AQ9NPI6 582 aaPredicted RBP13.08□□□□□ -0.32
LIG3-204ENST00000585740 INCENPQ9NQS7 918 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 FAM217BQ9NTX9 383 aaPredicted RBP13.08□□□□□ -0.32
LIG3-204ENST00000585740 POLR3EQ9NVU0 708 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.08□□□□□ -0.32
LIG3-204ENST00000585740 TNKSO95271 1327 aa13.08□□□□□ -0.32
LIG3-204ENST00000585740 USP17L12C9JPN9 530 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 USP17L21D6R901 530 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 PPEF1O14829 653 aaPredicted RBP13.07□□□□□ -0.32
LIG3-204ENST00000585740 DEXIO95424 95 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 NPR1P16066 1061 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 LIG1P18858 919 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 PDE6BP35913 854 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 STK38Q15208 465 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 SAFBQ15424 915 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIG3-204ENST00000585740 HS1BP3Q53T59 392 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 MYSM1Q5VVJ2 828 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 RBM43Q6ZSC3 357 aaKnown RBP13.07□□□□□ -0.32
LIG3-204ENST00000585740 CATIPQ7Z7H3 387 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 NKX2-3Q8TAU0 364 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 FUCA2Q9BTY2 467 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 SLC26A6Q9BXS9 759 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 SENP2Q9HC62 589 aa13.07□□□□□ -0.32
LIG3-204ENST00000585740 CDK5RAP2Q96SN8 1893 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 QSER1Q2KHR3 1735 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 A0A1W2PQ27 194 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 A0A1W2PQ64 194 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 A0A1W2PQD8 194 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 RANBP6O60518 1105 aaKnown RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 DDAH1O94760 285 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 CAVIN2O95810 425 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 ALDH1B1P30837 517 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 USP5P45974 858 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 AKAP17AQ02040 695 aaKnown RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 GNL2Q13823 731 aaKnown RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 SF3A1Q15459 793 aaKnown RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 IFIT1BQ5T764 474 aaKnown RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 MSL1Q68DK7 614 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 KRT40Q6A162 431 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 FANCBQ8NB91 859 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 TBC1D16Q8TBP0 767 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 PDLIM2Q96JY6 352 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 RNF26Q9BY78 433 aaPredicted RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 TMX4Q9H1E5 349 aaPredicted RBP13.06□□□□□ -0.32
LIG3-204ENST00000585740 DACT1Q9NYF0 836 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 SUGT1Q9Y2Z0 365 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 PARP3Q9Y6F1 533 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 MROH7-TTC4A0A0A0MT08 1334 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 FAM205AQ6ZU69 1335 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 ROBO3Q96MS0 1386 aa13.06□□□□□ -0.32
LIG3-204ENST00000585740 XBP1P17861 261 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 RXRAP19793 462 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 TPRNQ4KMQ1 711 aa13.05□□□□□ -0.32
LIG3-204ENST00000585740 ADALQ6DHV7 355 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms