RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 RPS6KB1P23443 525 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 TNFAIP1Q13829 316 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 COL9A3Q14050 684 aaPredicted RBP19.11■□□□□ 0.65
SS18-226ENST00000585241 METTL16Q86W50 562 aaKnown RBP19.11■□□□□ 0.65
SS18-226ENST00000585241 SNX21Q969T3 373 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 TTC14Q96N46 770 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 UPF3BQ9BZI7 483 aaKnown RBP19.11■□□□□ 0.65
SS18-226ENST00000585241 KRT23Q9C075 422 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 ALDH8A1Q9H2A2 487 aaPredicted RBP19.11■□□□□ 0.65
SS18-226ENST00000585241 VEZTQ9HBM0 779 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 CYP46A1Q9Y6A2 500 aa19.11■□□□□ 0.65
SS18-226ENST00000585241 ASTN2O75129 1339 aaPredicted RBP19.1■□□□□ 0.65
SS18-226ENST00000585241 IQCA1LA6NCM1 817 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 DDTLA6NHG4 134 aaPredicted RBP19.1■□□□□ 0.65
SS18-226ENST00000585241 POTECB2RU33 542 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 TCP10L2B9ZVM9 353 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 HLA-DOAP06340 250 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 TNNI2P48788 182 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 EXOSC10Q01780 885 aaKnown RBP19.1■□□□□ 0.65
SS18-226ENST00000585241 PDE4BQ07343 736 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 TCP10Q12799 353 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 TRDNQ13061 729 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 USP50Q70EL3 339 aaPredicted RBP19.1■□□□□ 0.65
SS18-226ENST00000585241 DHX32Q7L7V1 743 aaKnown RBP19.1■□□□□ 0.65
SS18-226ENST00000585241 APOBEC3FQ8IUX4 373 aaKnown RBP19.1■□□□□ 0.65
SS18-226ENST00000585241 PI4KBQ9UBF8 816 aa19.1■□□□□ 0.65
SS18-226ENST00000585241 NEK4P51957 841 aa19.09■□□□□ 0.65
SS18-226ENST00000585241 RALYLQ86SE5 291 aaKnown RBP19.09■□□□□ 0.65
SS18-226ENST00000585241 FBXL16Q8N461 479 aa19.09■□□□□ 0.65
SS18-226ENST00000585241 DYNLL2Q96FJ2 89 aa19.09■□□□□ 0.65
SS18-226ENST00000585241 MTA3Q9BTC8 594 aa19.09■□□□□ 0.65
SS18-226ENST00000585241 SWAP70Q9UH65 585 aa19.09■□□□□ 0.65
SS18-226ENST00000585241 SERPINB13Q9UIV8 391 aa19.09■□□□□ 0.65
SS18-226ENST00000585241 B4E1Z4 1266 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 ST18O60284 1047 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 CPA1P15085 419 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 EPHX2P34913 555 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 ANP32AP39687 249 aaKnown RBP19.08■□□□□ 0.64
SS18-226ENST00000585241 ANTXR2P58335 489 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 FOXP4Q8IVH2 680 aaPredicted RBP19.08■□□□□ 0.64
SS18-226ENST00000585241 NKX2-3Q8TAU0 364 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 AGXT2Q9BYV1 514 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 TAF1DQ9H5J8 278 aaPredicted RBP19.08■□□□□ 0.64
SS18-226ENST00000585241 ZNF287Q9HBT7 754 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 INCENPQ9NQS7 918 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 GGA3Q9NZ52 723 aa19.08■□□□□ 0.64
SS18-226ENST00000585241 MCM5P33992 734 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 CDK8P49336 464 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 RASA3Q14644 834 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 SLC4A8Q2Y0W8 1093 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 ANGEL2Q5VTE6 544 aaKnown RBP19.07■□□□□ 0.64
SS18-226ENST00000585241 ZC3H15Q8WU90 426 aaKnown RBP19.07■□□□□ 0.64
SS18-226ENST00000585241 ESR2Q92731 530 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 TEPSINQ96N21 525 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 DNAJC18Q9H819 358 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 PDRG1Q9NUG6 133 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 PPP2R3BQ9Y5P8 575 aa19.07■□□□□ 0.64
SS18-226ENST00000585241 TBC1D12O60347 775 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 RASA1P20936 1047 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 MAP3K10Q02779 954 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 CYB5R4Q7L1T6 521 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 ZSCAN29Q8IWY8 852 aaPredicted RBP19.06■□□□□ 0.64
SS18-226ENST00000585241 SLC44A5Q8NCS7 719 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 CSRNP1Q96S65 589 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 TMEM39BQ9GZU3 492 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 HERC5Q9UII4 1024 aaKnown RBP19.06■□□□□ 0.64
SS18-226ENST00000585241 PLIN4Q96Q06 1357 aa19.06■□□□□ 0.64
SS18-226ENST00000585241 PRC1O43663 620 aa19.05■□□□□ 0.64
SS18-226ENST00000585241 KDM4AO75164 1064 aa19.05■□□□□ 0.64
SS18-226ENST00000585241 CD2BP2O95400 341 aaKnown RBP19.05■□□□□ 0.64
SS18-226ENST00000585241 SHMT1P34896 483 aa19.05■□□□□ 0.64
SS18-226ENST00000585241 MCM2P49736 904 aa19.05■□□□□ 0.64
SS18-226ENST00000585241 DEFB129Q9H1M3 183 aa19.05■□□□□ 0.64
SS18-226ENST00000585241 ZSWIM5Q9P217 1185 aa19.05■□□□□ 0.64
SS18-226ENST00000585241 PRDM1O75626 825 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 AK2P54819 239 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 RRP12Q5JTH9 1297 aaKnown RBP19.04■□□□□ 0.64
SS18-226ENST00000585241 TATDN1Q6P1N9 297 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 PNMA8AQ86V59 439 aaPredicted RBP19.04■□□□□ 0.64
SS18-226ENST00000585241 STK11IPQ8N1F8 1099 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 TMEM87BQ96K49 555 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 MKNK2Q9HBH9 465 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 TOMM22Q9NS69 142 aa19.04■□□□□ 0.64
SS18-226ENST00000585241 TOB2Q14106 344 aaPredicted RBP19.03■□□□□ 0.64
SS18-226ENST00000585241 ANKRD1Q15327 319 aa19.03■□□□□ 0.64
SS18-226ENST00000585241 CDAN1Q8IWY9 1227 aa19.03■□□□□ 0.64
SS18-226ENST00000585241 TCEANC2Q96MN5 208 aa19.03■□□□□ 0.64
SS18-226ENST00000585241 TBC1D2Q9BYX2 928 aa19.03■□□□□ 0.64
SS18-226ENST00000585241 TCP11L1Q9NUJ3 509 aa19.03■□□□□ 0.64
SS18-226ENST00000585241 GREB1LQ9C091 1923 aaPredicted RBP19.03■□□□□ 0.64
SS18-226ENST00000585241 MYH8P13535 1937 aa19.02■□□□□ 0.64
SS18-226ENST00000585241 SH2B2O14492 632 aaPredicted RBP19.02■□□□□ 0.64
SS18-226ENST00000585241 RANBP6O60518 1105 aaKnown RBP19.02■□□□□ 0.64
SS18-226ENST00000585241 EVCP57679 992 aa19.02■□□□□ 0.64
SS18-226ENST00000585241 Q6ZUG5 572 aa19.02■□□□□ 0.64
SS18-226ENST00000585241 ZNF444Q8N0Y2 327 aaPredicted RBP19.02■□□□□ 0.64
SS18-226ENST00000585241 CRACR2BQ8N4Y2 399 aaPredicted RBP19.02■□□□□ 0.64
SS18-226ENST00000585241 NEDD1Q8NHV4 660 aa19.02■□□□□ 0.64
SS18-226ENST00000585241 IGDCC4Q8TDY8 1250 aa19.02■□□□□ 0.64
SS18-226ENST00000585241 CCDC17Q96LX7 622 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms