RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 MECOMQ03112 1051 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 ALDH1L2Q3SY69 923 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 DEFB123Q8N688 67 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 C11orf49Q9H6J7 331 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 COPRSQ9NQ92 184 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 GJD2Q9UKL4 321 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 AKAP2Q9Y2D5 859 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 PDS5AQ29RF7 1337 aaKnown RBP12.3□□□□□ -0.44
RFFL-208ENST00000581039 RFX7Q2KHR2 1363 aa12.3□□□□□ -0.44
RFFL-208ENST00000581039 MYH13Q9UKX3 1938 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 FAM196BA6NMK8 535 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 USP17L5A8MUK1 530 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 MAP4K4O95819 1239 aaPredicted RBP12.29□□□□□ -0.44
RFFL-208ENST00000581039 SYN1P17600 705 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 CAP2P40123 477 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 MNX1P50219 401 aaPredicted RBP12.29□□□□□ -0.44
RFFL-208ENST00000581039 RHBDL3P58872 404 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 MVPQ14764 893 aaKnown RBP12.29□□□□□ -0.44
RFFL-208ENST00000581039 XAGE2Q96GT9 111 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 ASCC2Q9H1I8 757 aaPredicted RBP12.29□□□□□ -0.44
RFFL-208ENST00000581039 AS3MTQ9HBK9 375 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 SMC4Q9NTJ3 1288 aa12.29□□□□□ -0.44
RFFL-208ENST00000581039 LAMA3Q16787 3333 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 A0A1B0GUL7 405 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 CYP2B6P20813 491 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 TRIM32Q13049 653 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 LRIT3Q3SXY7 679 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 NEUROD6Q96NK8 337 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 OGDHLQ9ULD0 1010 aa12.28□□□□□ -0.44
RFFL-208ENST00000581039 DOCK2Q92608 1830 aa12.27□□□□□ -0.44
RFFL-208ENST00000581039 MYH2Q9UKX2 1941 aa12.27□□□□□ -0.44
RFFL-208ENST00000581039 MAGEA10P43363 369 aaPredicted RBP12.27□□□□□ -0.45
RFFL-208ENST00000581039 IRX3P78415 501 aaPredicted RBP12.27□□□□□ -0.45
RFFL-208ENST00000581039 TFCP2Q12800 502 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 SH3D19Q5HYK7 790 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 GORABQ5T7V8 394 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 TDHQ8IZJ6 230 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 GPRC5AQ8NFJ5 357 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 TRIB2Q92519 343 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 NUDT12Q9BQG2 462 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 UBE2OQ9C0C9 1292 aaKnown RBP12.27□□□□□ -0.45
RFFL-208ENST00000581039 TMOD4Q9NZQ9 345 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 RAI14Q9P0K7 980 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 MORF4L1Q9UBU8 362 aa12.27□□□□□ -0.45
RFFL-208ENST00000581039 NOB1Q9ULX3 412 aaKnown RBP12.27□□□□□ -0.45
RFFL-208ENST00000581039 A0A0C4DFX4 3053 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 XRCC5P13010 732 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 PRKAR2AP13861 404 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 SLFN5Q08AF3 891 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 RRP1BQ14684 758 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 TBC1D9Q6ZT07 1266 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 Q7L0L9 218 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 CCAR1Q8IX12 1150 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 TEX11Q8IYF3 940 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 TRMT44Q8IYL2 757 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 SPATA5Q8NB90 893 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 ZNF384Q8TF68 577 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 NSUN4Q96CB9 384 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 P2RX7Q99572 595 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 NOL10Q9BSC4 688 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 WDR18Q9BV38 432 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 API5Q9BZZ5 524 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 HMG20BQ9P0W2 317 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 PI4KBQ9UBF8 816 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 HERC5Q9UII4 1024 aaKnown RBP12.26□□□□□ -0.45
RFFL-208ENST00000581039 STXBP5LQ9Y2K9 1186 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 DOCK3Q8IZD9 2030 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 COL6A3P12111 3177 aa12.26□□□□□ -0.45
RFFL-208ENST00000581039 DOCK1Q14185 1865 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 CUL9Q8IWT3 2517 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 SRGAP3O43295 1099 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 HOXA7P31268 230 aaPredicted RBP12.25□□□□□ -0.45
RFFL-208ENST00000581039 BACE1P56817 501 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 MTMR2Q13614 643 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 PDE3AQ14432 1141 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 MAP3K21Q5TCX8 1036 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 SOCS4Q8WXH5 440 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 DHX36Q9H2U1 1008 aaKnown RBP12.25□□□□□ -0.45
RFFL-208ENST00000581039 MTMR10Q9NXD2 777 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 LRP2BPQ9P2M1 347 aa12.25□□□□□ -0.45
RFFL-208ENST00000581039 C19orf81C9J6K1 198 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 BAG3O95817 575 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 ASNSP08243 561 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 PTPRFP10586 1907 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 ZKSCAN1P17029 563 aaPredicted RBP12.24□□□□□ -0.45
RFFL-208ENST00000581039 MAPK4P31152 587 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 FOXP4Q8IVH2 680 aaPredicted RBP12.24□□□□□ -0.45
RFFL-208ENST00000581039 SH3RF3Q8TEJ3 882 aaPredicted RBP12.24□□□□□ -0.45
RFFL-208ENST00000581039 PHIPQ8WWQ0 1821 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 MEIS3Q99687 375 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 TRIM34Q9BYJ4 488 aa12.24□□□□□ -0.45
RFFL-208ENST00000581039 COL2A1P02458 1487 aaPredicted RBP12.23□□□□□ -0.45
RFFL-208ENST00000581039 PFASO15067 1338 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 USP17L10C9JJH3 530 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 PEX10O60683 326 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 GNAI3P08754 354 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 HERVK_113P62684 666 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 CACNB2Q08289 660 aaPredicted RBP12.23□□□□□ -0.45
RFFL-208ENST00000581039 PI16Q6UXB8 463 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 CRACR2BQ8N4Y2 399 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms