RNA–Protein interactions for RNA: ENST00000578709.5

ERBB2-209, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 4

Gene ERBB2, Length 559 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-209	ENST00000578709	CSAD	Q9Y600	493 aa		28.49	■■■□□ 2.15
ERBB2-209	ENST00000578709	BAZ2A	Q9UIF9	1905 aa	Known RBP	28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	INPP5B	P32019	993 aa		28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	NOG	Q13253	232 aa		28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	GRM1	Q13255	1194 aa		28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	TTC6	Q86TZ1	520 aa		28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	FAM227B	Q96M60	508 aa		28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	EHD4	Q9H223	541 aa		28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	28.48	■■■□□ 2.15
ERBB2-209	ENST00000578709		A0A0D9SFI3	127 aa		28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	GSG1L2	A8MUP6	293 aa		28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	MAP2K2	P36507	400 aa		28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	NOL9	Q5SY16	702 aa	Known RBP	28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	GIMAP6	Q6P9H5	292 aa		28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	SKAP1	Q86WV1	359 aa		28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	ZKSCAN4	Q969J2	545 aa	Predicted RBP	28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	SNCAIP	Q9Y6H5	919 aa		28.47	■■■□□ 2.15
ERBB2-209	ENST00000578709	FAM196B	A6NMK8	535 aa		28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	HIP1	O00291	1037 aa		28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	AOC2	O75106	756 aa		28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	NMI	Q13287	307 aa	Predicted RBP	28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	DDRGK1	Q96HY6	314 aa		28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	DNAJC18	Q9H819	358 aa		28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	ELP3	Q9H9T3	547 aa		28.46	■■■□□ 2.15
ERBB2-209	ENST00000578709	PCNT	O95613	3336 aa		28.45	■■■□□ 2.15
ERBB2-209	ENST00000578709	POLR3D	P05423	398 aa	Predicted RBP	28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	PLCD1	P51178	756 aa		28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	SLC4A8	Q2Y0W8	1093 aa		28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	MCMDC2	Q4G0Z9	681 aa		28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	SPRYD7	Q5W111	196 aa		28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	WNK4	Q96J92	1243 aa		28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	SERPINB13	Q9UIV8	391 aa		28.45	■■■□□ 2.14
ERBB2-209	ENST00000578709	PATL2	C9JE40	543 aa	Known RBP	28.44	■■■□□ 2.14
ERBB2-209	ENST00000578709	CTNND1	O60716	968 aa	Known RBP	28.44	■■■□□ 2.14
ERBB2-209	ENST00000578709	CCDC129	Q6ZRS4	1044 aa		28.44	■■■□□ 2.14
ERBB2-209	ENST00000578709	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	28.44	■■■□□ 2.14
ERBB2-209	ENST00000578709	ZBTB48	P10074	688 aa	Predicted RBP	28.43	■■■□□ 2.14
ERBB2-209	ENST00000578709	ZIC5	Q96T25	663 aa		28.43	■■■□□ 2.14
ERBB2-209	ENST00000578709	DIAPH3	Q9NSV4	1193 aa		28.43	■■■□□ 2.14
ERBB2-209	ENST00000578709	TAOK2	Q9UL54	1235 aa		28.43	■■■□□ 2.14
ERBB2-209	ENST00000578709	SPDYE5	A6NIY4	337 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	USP17L12	C9JPN9	530 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	USP17L21	D6R901	530 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	GJA5	P36382	358 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	GABPA	Q06546	454 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	C12orf60	Q5U649	245 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	CTR9	Q6PD62	1173 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	ERO1B	Q86YB8	467 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	SCYL3	Q8IZE3	742 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	TRIM34	Q9BYJ4	488 aa		28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	28.42	■■■□□ 2.14
ERBB2-209	ENST00000578709	DOCK1	Q14185	1865 aa		28.41	■■■□□ 2.14
ERBB2-209	ENST00000578709	CYP2D6	P10635	497 aa		28.41	■■■□□ 2.14
ERBB2-209	ENST00000578709	SBK1	Q52WX2	424 aa		28.41	■■■□□ 2.14
ERBB2-209	ENST00000578709	OPTN	Q96CV9	577 aa		28.41	■■■□□ 2.14
ERBB2-209	ENST00000578709	ARPP21	Q9UBL0	812 aa	Predicted RBP	28.41	■■■□□ 2.14
ERBB2-209	ENST00000578709	LAMB1	P07942	1786 aa		28.41	■■■□□ 2.14
ERBB2-209	ENST00000578709	FOXP2	O15409	715 aa		28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	KIF23	Q02241	960 aa	Predicted RBP	28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	EVX2	Q03828	476 aa		28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	RRP1B	Q14684	758 aa	Known RBP	28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	BMP2KL	Q5H9B9	411 aa		28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	AMOTL1	Q8IY63	956 aa		28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	CNKSR2	Q8WXI2	1034 aa		28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	28.4	■■■□□ 2.14
ERBB2-209	ENST00000578709	APP	P05067	770 aa		28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	CAP2	P40123	477 aa		28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	TATDN1	Q6P1N9	297 aa		28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	CWC27	Q6UX04	472 aa	Known RBP	28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	ZNF589	Q86UQ0	364 aa	Predicted RBP	28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	IFNL3	Q8IZI9	196 aa		28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	NACAP1	Q9BZK3	213 aa		28.39	■■■□□ 2.14
ERBB2-209	ENST00000578709	CCDC171	Q6TFL3	1326 aa		28.39	■■■□□ 2.13
ERBB2-209	ENST00000578709	CYP2D7	A0A087X1C5	515 aa		28.38	■■■□□ 2.13
ERBB2-209	ENST00000578709	PPAT	Q06203	517 aa		28.38	■■■□□ 2.13
ERBB2-209	ENST00000578709	MKRN3	Q13064	507 aa	Known RBP	28.38	■■■□□ 2.13
ERBB2-209	ENST00000578709	REM2	Q8IYK8	340 aa	Predicted RBP	28.38	■■■□□ 2.13
ERBB2-209	ENST00000578709	PICK1	Q9NRD5	415 aa		28.38	■■■□□ 2.13
ERBB2-209	ENST00000578709	ATAD5	Q96QE3	1844 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	PTPRA	P18433	802 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	CHML	P26374	656 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	SHMT1	P34896	483 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	TDO2	P48775	406 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	MFAP1	P55081	439 aa	Known RBP	28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	PPIL2	Q13356	520 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	VPS53	Q5VIR6	699 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	OTUD5	Q96G74	571 aa		28.37	■■■□□ 2.13
ERBB2-209	ENST00000578709	MAP2K1	Q02750	393 aa	Predicted RBP	28.36	■■■□□ 2.13
ERBB2-209	ENST00000578709	ALX1	Q15699	326 aa		28.36	■■■□□ 2.13
ERBB2-209	ENST00000578709	GINM1	Q9NU53	330 aa		28.36	■■■□□ 2.13
ERBB2-209	ENST00000578709	SWAP70	Q9UH65	585 aa		28.36	■■■□□ 2.13
ERBB2-209	ENST00000578709	SMIM22	K7EJ46	135 aa		28.35	■■■□□ 2.13
ERBB2-209	ENST00000578709	DYNLL2	Q96FJ2	89 aa		28.35	■■■□□ 2.13
ERBB2-209	ENST00000578709	NAPB	Q9H115	298 aa		28.35	■■■□□ 2.13
ERBB2-209	ENST00000578709	ROBO3	Q96MS0	1386 aa		28.35	■■■□□ 2.13
ERBB2-209	ENST00000578709	MANSC4	A6NHS7	340 aa	Predicted RBP	28.34	■■■□□ 2.13
ERBB2-209	ENST00000578709	IRF6	O14896	467 aa		28.34	■■■□□ 2.13
ERBB2-209	ENST00000578709	HSPD1	P10809	573 aa	Known RBP	28.34	■■■□□ 2.13
ERBB2-209	ENST00000578709	C16orf86	Q6ZW13	317 aa		28.34	■■■□□ 2.13
ERBB2-209	ENST00000578709	MS4A4A	Q96JQ5	239 aa		28.34	■■■□□ 2.13

Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms