RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ERICH6Q7L0X2 663 aa12.27□□□□□ -0.45
SS18-210ENST00000578700 OTUD7AQ8TE49 926 aaPredicted RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 U2AF1L4Q8WU68 220 aaKnown RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 PARK7Q99497 189 aaKnown RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 SIL1Q9H173 461 aa12.27□□□□□ -0.45
SS18-210ENST00000578700 USP40Q9NVE5 1235 aa12.27□□□□□ -0.45
SS18-210ENST00000578700 PA2G4Q9UQ80 394 aaKnown RBP12.27□□□□□ -0.45
SS18-210ENST00000578700 ADCY3O60266 1144 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 EVI5O60447 810 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 GSPT1P15170 499 aaKnown RBP12.26□□□□□ -0.45
SS18-210ENST00000578700 SDSP20132 328 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 NFIAQ12857 509 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 DIXDC1Q155Q3 683 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 CDC42EP5Q6NZY7 148 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 AACSQ86V21 672 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 KCNH4Q9UQ05 1017 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 SUGT1Q9Y2Z0 365 aa12.26□□□□□ -0.45
SS18-210ENST00000578700 GLRX3O76003 335 aaKnown RBP12.25□□□□□ -0.45
SS18-210ENST00000578700 SGPL1O95470 568 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 SLC5A1P13866 664 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 ELNP15502 786 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 IL15P40933 162 aaPredicted RBP12.25□□□□□ -0.45
SS18-210ENST00000578700 FLT3LGP49771 235 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 MOGSQ13724 837 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 PUM3Q15397 648 aaKnown RBP12.25□□□□□ -0.45
SS18-210ENST00000578700 GPAT2Q6NUI2 795 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 TBC1D9Q6ZT07 1266 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 ZSCAN29Q8IWY8 852 aaPredicted RBP12.25□□□□□ -0.45
SS18-210ENST00000578700 ZFPM1Q8IX07 1006 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 VGLL2Q8N8G2 317 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 SLAIN1Q8ND83 568 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 WDR66Q8TBY9 1149 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 PICK1Q9NRD5 415 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 ECHDC1Q9NTX5 307 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 ZNF112Q9UJU3 913 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 FBXO3Q9UK99 471 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 DAGLAQ9Y4D2 1042 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 ZHX2Q9Y6X8 837 aa12.25□□□□□ -0.45
SS18-210ENST00000578700 CXCL11O14625 94 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 TNPO2O14787 897 aaKnown RBP12.24□□□□□ -0.45
SS18-210ENST00000578700 REC8O95072 547 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 INHAP05111 366 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 BCRP11274 1271 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 PRDX5P30044 214 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 BECN1Q14457 450 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 UBE2Q1Q7Z7E8 422 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 RILPL2Q969X0 211 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 LRCH3Q96II8 777 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 ADGRA2Q96PE1 1338 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 DEFB118Q96PH6 123 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 RPAP1Q9BWH6 1393 aaPredicted RBP12.24□□□□□ -0.45
SS18-210ENST00000578700 SALL3Q9BXA9 1300 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 C22orf23Q9BZE7 217 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 FAM198AQ9UFP1 575 aa12.24□□□□□ -0.45
SS18-210ENST00000578700 LAMA2P24043 3122 aaKnown RBP12.24□□□□□ -0.45
SS18-210ENST00000578700 CIAO1O76071 339 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 SEC24BO95487 1268 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 LDHBP07195 334 aaKnown RBP12.23□□□□□ -0.45
SS18-210ENST00000578700 SLURP2P0DP57 97 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 FGFR2P21802 821 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 RFX5P48382 616 aaPredicted RBP12.23□□□□□ -0.45
SS18-210ENST00000578700 NOL9Q5SY16 702 aaKnown RBP12.23□□□□□ -0.45
SS18-210ENST00000578700 FASTKD5Q7L8L6 764 aaKnown RBP12.23□□□□□ -0.45
SS18-210ENST00000578700 SMCR8Q8TEV9 937 aaPredicted RBP12.23□□□□□ -0.45
SS18-210ENST00000578700 LPIN2Q92539 896 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 TBC1D32Q96NH3 1257 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 DOCK3Q8IZD9 2030 aa12.23□□□□□ -0.45
SS18-210ENST00000578700 UNC80Q8N2C7 3258 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 PTPRFP10586 1907 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 EYA2O00167 538 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 SOX1O00570 391 aaPredicted RBP12.22□□□□□ -0.45
SS18-210ENST00000578700 PTPRAP18433 802 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 SCYL3Q8IZE3 742 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 PAWRQ96IZ0 340 aaKnown RBP12.22□□□□□ -0.45
SS18-210ENST00000578700 PRO3102Q9H379 93 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 AKAP2Q9Y2D5 859 aa12.22□□□□□ -0.45
SS18-210ENST00000578700 DNAH12Q6ZR08 3092 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 TRIM75PA6NK02 468 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 TFCP2Q12800 502 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 TNNI3KQ59H18 835 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 TSHZ3Q63HK5 1081 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 CCDC84Q86UT8 332 aaPredicted RBP12.21□□□□□ -0.45
SS18-210ENST00000578700 ANKRD13CQ8N6S4 541 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 GPR108Q9NPR9 543 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 GNL3LQ9NVN8 582 aaKnown RBP12.21□□□□□ -0.45
SS18-210ENST00000578700 CEP126Q9P2H0 1117 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.21□□□□□ -0.45
SS18-210ENST00000578700 AFG3L2Q9Y4W6 797 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 FPGT-TNNI3KV9GXZ4 949 aa12.21□□□□□ -0.45
SS18-210ENST00000578700 A0A0G2JLL6 359 aaPredicted RBP12.2□□□□□ -0.46
SS18-210ENST00000578700 PHF20L1A8MW92 1017 aa12.2□□□□□ -0.46
SS18-210ENST00000578700 HIP1O00291 1037 aa12.2□□□□□ -0.46
SS18-210ENST00000578700 PICALMQ13492 652 aa12.2□□□□□ -0.46
SS18-210ENST00000578700 PRRT2Q7Z6L0 340 aaPredicted RBP12.2□□□□□ -0.46
SS18-210ENST00000578700 C7orf61Q8IZ16 206 aa12.2□□□□□ -0.46
SS18-210ENST00000578700 DIS3LQ8TF46 1054 aaKnown RBP12.2□□□□□ -0.46
SS18-210ENST00000578700 RUFY2Q8WXA3 655 aa12.2□□□□□ -0.46
SS18-210ENST00000578700 COA7Q96BR5 231 aa12.2□□□□□ -0.46
SS18-210ENST00000578700 EAF2Q96CJ1 260 aaPredicted RBP12.2□□□□□ -0.46
SS18-210ENST00000578700 CCDC8Q9H0W5 538 aaPredicted RBP12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms