RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	ERICH2	A1L162	156 aa		16.99	■□□□□ 0.31
PRPF8-216	ENST00000577001	CYP2D6	P10635	497 aa		16.99	■□□□□ 0.31
PRPF8-216	ENST00000577001	AKAP17A	Q02040	695 aa	Known RBP	16.99	■□□□□ 0.31
PRPF8-216	ENST00000577001	GDAP1L1	Q96MZ0	367 aa		16.99	■□□□□ 0.31
PRPF8-216	ENST00000577001	INTS13	Q9NVM9	706 aa		16.99	■□□□□ 0.31
PRPF8-216	ENST00000577001	SLAIN2	Q9P270	581 aa		16.99	■□□□□ 0.31
PRPF8-216	ENST00000577001	GSG1L2	A8MUP6	293 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	YEATS4	O95619	227 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	SARM1	Q6SZW1	724 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	C3orf67	Q6ZVT6	689 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	UBXN4	Q92575	508 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	16.98	■□□□□ 0.31	3e-7	■■□□□ 11.5
PRPF8-216	ENST00000577001	ZMYM6	O95789	1325 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	ATP6V1A	P38606	617 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	MAP3K12	Q12852	859 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	KRBA2	Q6ZNG9	492 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	MAN1B1	Q9UKM7	699 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001	MAP3K15	Q6ZN16	1313 aa		16.98	■□□□□ 0.31
PRPF8-216	ENST00000577001		A0A087X0B3	334 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	ZFY	P08048	801 aa	Predicted RBP	16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	PTPA	Q15257	358 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	LRRFIP1	Q32MZ4	808 aa	Known RBP	16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	VPS16	Q9H269	839 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	KCNQ2	O43526	872 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	MCM7	P33993	719 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	CLCN6	P51797	869 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	MRPS25	P82663	173 aa	Known RBP	16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	ERVV-2	B6SEH9	535 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	BRAP	Q7Z569	592 aa		16.97	■□□□□ 0.31
PRPF8-216	ENST00000577001	NTRK3	Q16288	839 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001	NOSTRIN	Q8IVI9	506 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001	KRI1	Q8N9T8	703 aa	Known RBP	16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001		A0A1W2PQ27	194 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001		A0A1W2PQ64	194 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001		A0A1W2PQD8	194 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001	CIAO1	O76071	339 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001	TRIM22	Q8IYM9	498 aa		16.96	■□□□□ 0.31
PRPF8-216	ENST00000577001	AFDN	P55196	1824 aa	Known RBP	16.96	■□□□□ 0.3
PRPF8-216	ENST00000577001	NRDC	O43847	1150 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	PHACTR2	O75167	634 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	AKNAD1	Q5T1N1	836 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	SMARCE1	Q969G3	411 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	AATF	Q9NY61	560 aa	Known RBP eCLIP	16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	OGFR	Q9NZT2	677 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	16.95	■□□□□ 0.3	3e-10	■■■□□ 18.9
PRPF8-216	ENST00000577001	POSTN	Q15063	836 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	CCDC12	Q8WUD4	166 aa	Predicted RBP	16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	SHISA4	Q96DD7	197 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	MAP3K14	Q99558	947 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	GPR108	Q9NPR9	543 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	MED15	Q96RN5	788 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	SUGCT	Q9HAC7	445 aa		16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	DDX41	Q9UJV9	622 aa	Known RBP	16.95	■□□□□ 0.3
PRPF8-216	ENST00000577001	EVC	P57679	992 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	GSDMD	P57764	484 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	ZNF654	Q8IZM8	581 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	ZNF397	Q8NF99	534 aa	Predicted RBP	16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	NEK11	Q8NG66	645 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	PLEKHA4	Q9H4M7	779 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	TNKS	O95271	1327 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	SOS2	Q07890	1332 aa	Predicted RBP	16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	PP2D1	A8MPX8	630 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	PATL2	C9JE40	543 aa	Known RBP	16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	SLC5A1	P13866	664 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	CD44	P16070	742 aa	Known RBP	16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	PTF1A	Q7RTS3	328 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	BAG1	Q99933	345 aa	Predicted RBP	16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	VAT1L	Q9HCJ6	419 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	CSF1R	P07333	972 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	RHOXF2B	P0C7M4	288 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	CYP19A1	P11511	503 aa	Predicted RBP	16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	PIK3AP1	Q6ZUJ8	805 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	RHOXF2	Q9BQY4	288 aa		16.94	■□□□□ 0.3
PRPF8-216	ENST00000577001	LMO7	Q8WWI1	1683 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	PDE8A	O60658	829 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	CDC25B	P30305	580 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	PUM3	Q15397	648 aa	Known RBP	16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	JMY	Q8N9B5	988 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	ACRBP	Q8NEB7	543 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	MRPL44	Q9H9J2	332 aa	Known RBP	16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	PPP2R2C	Q9Y2T4	447 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	CHRND	Q07001	517 aa		16.93	■□□□□ 0.3
PRPF8-216	ENST00000577001	USP17L12	C9JPN9	530 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	USP17L21	D6R901	530 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	EXOC5	O00471	708 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	CDKL5	O76039	1030 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	GOLGA8H	P0CJ92	632 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	FANCB	Q8NB91	859 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	ERO1A	Q96HE7	468 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	CTNND2	Q9UQB3	1225 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	PDIA4	P13667	645 aa	Known RBP	16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	ETF1	P62495	437 aa	Known RBP	16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	MCM6	Q14566	821 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	KRT222	Q8N1A0	295 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	CDC5L	Q99459	802 aa	Known RBP	16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	TAB2	Q9NYJ8	693 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	RAD21	O60216	631 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	RESP18	Q5W5W9	173 aa		16.92	■□□□□ 0.3
PRPF8-216	ENST00000577001	LPIN2	Q92539	896 aa		16.92	■□□□□ 0.3

Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms