RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SNRKQ9NRH2 765 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 CPA4Q9UI42 421 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 DOCK2Q92608 1830 aa16.79■□□□□ 0.28
CCDC40-216ENST00000576241 EVI5O60447 810 aa16.78■□□□□ 0.28
CCDC40-216ENST00000576241 GJB1P08034 283 aa16.78■□□□□ 0.28
CCDC40-216ENST00000576241 MOGSQ13724 837 aa16.78■□□□□ 0.28
CCDC40-216ENST00000576241 NAA16Q6N069 864 aaPredicted RBP16.78■□□□□ 0.28
CCDC40-216ENST00000576241 C17orf99Q6UX52 265 aa16.78■□□□□ 0.28
CCDC40-216ENST00000576241 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.78■□□□□ 0.28
CCDC40-216ENST00000576241 TEX11Q8IYF3 940 aa16.78■□□□□ 0.28
CCDC40-216ENST00000576241 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.78■□□□□ 0.28
CCDC40-216ENST00000576241 NOP58Q9Y2X3 529 aaKnown RBP16.78■□□□□ 0.28
CCDC40-216ENST00000576241 A0A0G2JLL6 359 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-216ENST00000576241 TBC1D12O60347 775 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 FARP2O94887 1054 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-216ENST00000576241 BAG3O95817 575 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 CCL5P13501 91 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 PRMT2P55345 433 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 GADL1Q6ZQY3 521 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 PRRT2Q7Z6L0 340 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-216ENST00000576241 OSBPL5Q9H0X9 879 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-216ENST00000576241 MTMR10Q9NXD2 777 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 AFG3L2Q9Y4W6 797 aa16.77■□□□□ 0.28
CCDC40-216ENST00000576241 COL2A1P02458 1487 aaPredicted RBP16.77■□□□□ 0.28
CCDC40-216ENST00000576241 PLCG2P16885 1265 aa16.76■□□□□ 0.27
CCDC40-216ENST00000576241 PSMC4P43686 418 aa16.76■□□□□ 0.27
CCDC40-216ENST00000576241 GPAT2Q6NUI2 795 aa16.76■□□□□ 0.27
CCDC40-216ENST00000576241 SH3RF3Q8TEJ3 882 aaPredicted RBP16.76■□□□□ 0.27
CCDC40-216ENST00000576241 ZNF512BQ96KM6 892 aaPredicted RBP16.76■□□□□ 0.27
CCDC40-216ENST00000576241 RNF208Q9H0X6 261 aa16.76■□□□□ 0.27
CCDC40-216ENST00000576241 VCANP13611 3396 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 ADGRA2Q96PE1 1338 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 TRIM75PA6NK02 468 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 FAM196BA6NMK8 535 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 FMNL1O95466 1100 aaPredicted RBP16.75■□□□□ 0.27
CCDC40-216ENST00000576241 SLURP2P0DP57 97 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 MS4A1P11836 297 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 HOXD10P28358 340 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 GRK4P32298 578 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 CEP85Q6P2H3 762 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 ERC1Q8IUD2 1116 aa16.75■□□□□ 0.27
CCDC40-216ENST00000576241 DBNLQ9UJU6 430 aaKnown RBP16.75■□□□□ 0.27
CCDC40-216ENST00000576241 IGSF3O75054 1194 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 CYP2E1P05181 493 aaPredicted RBP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 CYP2C8P10632 490 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 CTGFP29279 349 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 ZAP70P43403 619 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 PANK1Q8TE04 598 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 U2AF1L4Q8WU68 220 aaKnown RBP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 TRIM47Q96LD4 638 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 CCDC8Q9H0W5 538 aaPredicted RBP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 DHX36Q9H2U1 1008 aaKnown RBP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 AATFQ9NY61 560 aaKnown RBP eCLIP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 TLR7Q9NYK1 1049 aaKnown RBP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 HERC5Q9UII4 1024 aaKnown RBP16.74■□□□□ 0.27
CCDC40-216ENST00000576241 SLC45A1Q9Y2W3 748 aa16.74■□□□□ 0.27
CCDC40-216ENST00000576241 RAET1EQ8TD07 263 aa16.73■□□□□ 0.27
CCDC40-216ENST00000576241 SMCR8Q8TEV9 937 aaPredicted RBP16.73■□□□□ 0.27
CCDC40-216ENST00000576241 GDF15Q99988 308 aa16.73■□□□□ 0.27
CCDC40-216ENST00000576241 PRDM6Q9NQX0 595 aa16.73■□□□□ 0.27
CCDC40-216ENST00000576241 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.73■□□□□ 0.27
CCDC40-216ENST00000576241 PI4KBQ9UBF8 816 aa16.73■□□□□ 0.27
CCDC40-216ENST00000576241 SRRDQ9UH36 339 aa16.73■□□□□ 0.27
CCDC40-216ENST00000576241 DOCK1Q14185 1865 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 OSBPP22059 807 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 BMP8BP34820 402 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 CAP2P40123 477 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 FCGRTP55899 365 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 PPP4CP60510 307 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 HSP90AB4PQ58FF6 505 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 CCDC84Q86UT8 332 aaPredicted RBP16.72■□□□□ 0.27
CCDC40-216ENST00000576241 EAF2Q96CJ1 260 aaPredicted RBP16.72■□□□□ 0.27
CCDC40-216ENST00000576241 TRIM34Q9BYJ4 488 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 TBC1D2Q9BYX2 928 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 PIH1D3Q9NQM4 214 aaKnown RBP16.72■□□□□ 0.27
CCDC40-216ENST00000576241 BIN2Q9UBW5 565 aaPredicted RBP16.72■□□□□ 0.27
CCDC40-216ENST00000576241 AGTPBP1Q9UPW5 1226 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 ALPK3Q96L96 1907 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 MAST2Q6P0Q8 1798 aa16.72■□□□□ 0.27
CCDC40-216ENST00000576241 IDH1O75874 414 aaKnown RBP16.71■□□□□ 0.27
CCDC40-216ENST00000576241 BCRP11274 1271 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 CYP7A1P22680 504 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 ADGRA1Q86SQ6 560 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 AACSQ86V21 672 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 MAPKAPK5Q8IW41 473 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 TGFBRAP1Q8WUH2 860 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 PNMA3Q9UL41 463 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 EXOC6BQ9Y2D4 811 aa16.71■□□□□ 0.27
CCDC40-216ENST00000576241 MYPNQ86TC9 1320 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 SGPL1O95470 568 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 SPP2Q13103 211 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 LRIT3Q3SXY7 679 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 CERS3Q8IU89 383 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 CRACR2BQ8N4Y2 399 aaPredicted RBP16.7■□□□□ 0.26
CCDC40-216ENST00000576241 PROCA1Q8NCQ7 364 aaPredicted RBP16.7■□□□□ 0.26
CCDC40-216ENST00000576241 ZNF280CQ8ND82 737 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 UNC93B1Q9H1C4 597 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 FLT1P17948 1338 aa16.7■□□□□ 0.26
CCDC40-216ENST00000576241 SPTBN5Q9NRC6 3674 aaKnown RBP16.69■□□□□ 0.26
CCDC40-216ENST00000576241 USP17L5A8MUK1 530 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms