RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 NKD1Q969G9 470 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 NLRP3Q96P20 1036 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 OXCT2Q9BYC2 517 aaPredicted RBP7.64□□□□□ -1.19
VPS53-219ENST00000576019 KCNQ5Q9NR82 932 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 LATS2Q9NRM7 1088 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 ACTR10Q9NZ32 417 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 AKAP2Q9Y2D5 859 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 KCNMB2Q9Y691 235 aa7.64□□□□□ -1.19
VPS53-219ENST00000576019 GREM1O60565 184 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 LIG3P49916 1009 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 CDKN1CP49918 316 aaPredicted RBP7.63□□□□□ -1.19
VPS53-219ENST00000576019 NR5A1Q13285 461 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 RASGRF1Q13972 1273 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 HIF1AQ16665 826 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 RC3H1Q5TC82 1133 aaKnown RBP7.63□□□□□ -1.19
VPS53-219ENST00000576019 PRPF40BQ6NWY9 871 aaKnown RBP7.63□□□□□ -1.19
VPS53-219ENST00000576019 RHBDD1Q8TEB9 315 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 UBE2Q2Q8WVN8 375 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 FAM126AQ9BYI3 521 aaPredicted RBP7.63□□□□□ -1.19
VPS53-219ENST00000576019 BTG4Q9NY30 223 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 SBF2Q86WG5 1849 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 PAPPAQ13219 1627 aa7.63□□□□□ -1.19
VPS53-219ENST00000576019 MEGF6O75095 1541 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 MYO5BQ9ULV0 1848 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 COL14A1Q05707 1796 aaKnown RBP7.62□□□□□ -1.19
VPS53-219ENST00000576019 SPATA31A1Q5TZJ5 1347 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 PEAK1Q9H792 1746 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 CELA3AP09093 270 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 CNGA1P29973 690 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 INPP5BP32019 993 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 RHBDL3P58872 404 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 SEZ6Q53EL9 994 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 C2orf27AQ580R0 203 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 IER5Q5VY09 327 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 FBXW10Q5XX13 1052 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 LARP1BQ659C4 914 aaKnown RBP7.62□□□□□ -1.19
VPS53-219ENST00000576019 NBPF10Q6P3W6 841 aaKnown RBP7.62□□□□□ -1.19
VPS53-219ENST00000576019 TPTE2Q6XPS3 522 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 JAMLQ86YT9 394 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 SMC5Q8IY18 1101 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 SPOCK3Q9BQ16 436 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 PPP4R2Q9NY27 417 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 CFDP1Q9UEE9 299 aaPredicted RBP7.62□□□□□ -1.19
VPS53-219ENST00000576019 TRAK1Q9UPV9 953 aa7.62□□□□□ -1.19
VPS53-219ENST00000576019 A0A1W2PP55 124 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 C11orf95C9JLR9 678 aaPredicted RBP7.61□□□□□ -1.19
VPS53-219ENST00000576019 TLR3O15455 904 aaKnown RBP7.61□□□□□ -1.19
VPS53-219ENST00000576019 VIL1P09327 827 aaKnown RBP7.61□□□□□ -1.19
VPS53-219ENST00000576019 RLBP1P12271 317 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 GTF2E1P29083 439 aaPredicted RBP7.61□□□□□ -1.19
VPS53-219ENST00000576019 EIF6P56537 245 aaKnown RBP7.61□□□□□ -1.19
VPS53-219ENST00000576019 CAMK2GQ13555 558 aaPredicted RBP7.61□□□□□ -1.19
VPS53-219ENST00000576019 GRIN2CQ14957 1233 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 C21orf62-AS1Q17RA5 79 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 MTERF2Q49AM1 385 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 SLC16A10Q8TF71 515 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 AGBL1Q96MI9 1066 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 PFDN2Q9UHV9 154 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 PPM1HQ9ULR3 514 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 PTCH2Q9Y6C5 1203 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 LMTK2Q8IWU2 1503 aa7.61□□□□□ -1.19
VPS53-219ENST00000576019 LRPPRCP42704 1394 aaKnown RBP7.6□□□□□ -1.19
VPS53-219ENST00000576019 ASMTLO95671 621 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 TXNRD1Q16881 649 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 KIAA0319Q5VV43 1072 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 DTHD1Q6ZMT9 781 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 SV2BQ7L1I2 683 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 SLITRK4Q8IW52 837 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 WDR75Q8IWA0 830 aaKnown RBP7.6□□□□□ -1.19
VPS53-219ENST00000576019 C7orf43Q8WVR3 580 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 TSR2Q969E8 191 aaKnown RBP7.6□□□□□ -1.19
VPS53-219ENST00000576019 FERD3LQ96RJ6 166 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.6□□□□□ -1.19
VPS53-219ENST00000576019 ABI2Q9NYB9 513 aaPredicted RBP7.6□□□□□ -1.19
VPS53-219ENST00000576019 KANSL3Q9P2N6 904 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 TCEAL9Q9UHQ7 104 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 CD2APQ9Y5K6 639 aa7.6□□□□□ -1.19
VPS53-219ENST00000576019 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.6□□□□□ -1.19
VPS53-219ENST00000576019 ARHGEF5Q12774 1597 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 DIAPH1O60610 1272 aaKnown RBP7.59□□□□□ -1.19
VPS53-219ENST00000576019 EIF3JO75822 258 aaKnown RBP7.59□□□□□ -1.19
VPS53-219ENST00000576019 CES1P23141 567 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 PTGIRP43119 386 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 VEGFBP49765 207 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 RELBQ01201 579 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 LMNB2Q03252 620 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 NBPF1Q3BBV0 1214 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 BRDTQ58F21 947 aaPredicted RBP7.59□□□□□ -1.19
VPS53-219ENST00000576019 DALRD3Q5D0E6 543 aaKnown RBP7.59□□□□□ -1.19
VPS53-219ENST00000576019 GNASQ5JWF2 1037 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 BTLAQ7Z6A9 289 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 FBXO27Q8NI29 283 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 ANKRD24Q8TF21 1146 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 THAP3Q8WTV1 239 aaPredicted RBP7.59□□□□□ -1.19
VPS53-219ENST00000576019 ABCB6Q9NP58 842 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 CCDC141Q6ZP82 1450 aa7.59□□□□□ -1.19
VPS53-219ENST00000576019 QSER1Q2KHR3 1735 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 KDM2BQ8NHM5 1336 aa7.58□□□□□ -1.2
VPS53-219ENST00000576019 TNRC6CQ9HCJ0 1690 aaKnown RBP7.58□□□□□ -1.2
VPS53-219ENST00000576019 VIRMAQ69YN4 1812 aaKnown RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms