RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 RGS2P41220 211 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 CCDC27Q2M243 656 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 ZGPATQ8N5A5 531 aaKnown RBP13.82□□□□□ -0.2
VPS53-207ENST00000570510 KLHDC4Q8TBB5 520 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 AS3MTQ9HBK9 375 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 TMOD4Q9NZQ9 345 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 IL16Q14005 1332 aa13.82□□□□□ -0.2
VPS53-207ENST00000570510 CNGA1P29973 690 aa13.81□□□□□ -0.2
VPS53-207ENST00000570510 CCND3P30281 292 aaPredicted RBP13.81□□□□□ -0.2
VPS53-207ENST00000570510 TJAP1Q5JTD0 557 aa13.81□□□□□ -0.2
VPS53-207ENST00000570510 FAM122AQ96E09 287 aa13.81□□□□□ -0.2
VPS53-207ENST00000570510 OSBPL5Q9H0X9 879 aaPredicted RBP13.81□□□□□ -0.2
VPS53-207ENST00000570510 PRDM5Q9NQX1 630 aaPredicted RBP13.81□□□□□ -0.2
VPS53-207ENST00000570510 DENND2AQ9ULE3 1009 aa13.81□□□□□ -0.2
VPS53-207ENST00000570510 FANCIQ9NVI1 1328 aa13.81□□□□□ -0.2
VPS53-207ENST00000570510 ATRNL1Q5VV63 1379 aa13.81□□□□□ -0.2
VPS53-207ENST00000570510 DOCK3Q8IZD9 2030 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 TMEM265A0A087WTH1 108 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 USP17L5A8MUK1 530 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 FGFR2P21802 821 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 MAP3K10Q02779 954 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 EXOSC9Q06265 439 aaKnown RBP13.8□□□□□ -0.2
VPS53-207ENST00000570510 SHHQ15465 462 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 MFSD14CQ5VZR4 134 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 LHX8Q68G74 356 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 SH3BP5LQ7L8J4 393 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 KAZALD1Q96I82 304 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 MORF4L1Q9UBU8 362 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 ABCF2Q9UG63 623 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 ATP11BQ9Y2G3 1177 aa13.8□□□□□ -0.2
VPS53-207ENST00000570510 SLURP2P0DP57 97 aa13.79□□□□□ -0.2
VPS53-207ENST00000570510 RABL6Q3YEC7 729 aaPredicted RBP13.79□□□□□ -0.2
VPS53-207ENST00000570510 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
VPS53-207ENST00000570510 SPTBN5Q9NRC6 3674 aaKnown RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 FAM196BA6NMK8 535 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 TBC1D12O60347 775 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 MSCO60682 206 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 GLRX3O76003 335 aaKnown RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 MYCNP04198 464 aaPredicted RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 BTDP43251 543 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 RTP1P59025 263 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 SMAD3P84022 425 aaKnown RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 WDR78Q5VTH9 848 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 SPTY2D1Q68D10 685 aaPredicted RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 IL27Q8NEV9 243 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 P2RX7Q99572 595 aaKnown RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 APBA2Q99767 749 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 PAGR1Q9BTK6 254 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 CEP126Q9P2H0 1117 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 LAMA2P24043 3122 aaKnown RBP13.78□□□□□ -0.2
VPS53-207ENST00000570510 EYSQ5T1H1 3165 aa13.78□□□□□ -0.2
VPS53-207ENST00000570510 EYA2O00167 538 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 SEMA3EO15041 775 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 COL2A1P02458 1487 aaPredicted RBP13.77□□□□□ -0.21
VPS53-207ENST00000570510 HERVK_113P62684 666 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 MTMR2Q13614 643 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 CCL14Q16627 93 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 ATP2B3Q16720 1220 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 PLEKHH3Q7Z736 793 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 DDX4Q9NQI0 724 aaKnown RBP13.77□□□□□ -0.21
VPS53-207ENST00000570510 SALL1Q9NSC2 1324 aa13.77□□□□□ -0.21
VPS53-207ENST00000570510 SALL2Q9Y467 1007 aaPredicted RBP13.77□□□□□ -0.21
VPS53-207ENST00000570510 DOCK2Q92608 1830 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 KBTBD13C9JR72 458 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 PLA2G5P39877 138 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 CAP2P40123 477 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 ATP2B2Q01814 1243 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 SH3D19Q5HYK7 790 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 C9orf50Q5SZB4 431 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 GPR142Q7Z601 462 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 ANKRD44Q8N8A2 993 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 ARRDC4Q8NCT1 418 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 GTF3C2Q8WUA4 911 aaPredicted RBP13.76□□□□□ -0.21
VPS53-207ENST00000570510 EDC3Q96F86 508 aaKnown RBP13.76□□□□□ -0.21
VPS53-207ENST00000570510 TRIM34Q9BYJ4 488 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 TTYH1Q9H313 450 aaPredicted RBP13.76□□□□□ -0.21
VPS53-207ENST00000570510 DDX20Q9UHI6 824 aaKnown RBP13.76□□□□□ -0.21
VPS53-207ENST00000570510 RAPGEFL1Q9UHV5 662 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 CACNA1FO60840 1977 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 DOCK1Q14185 1865 aa13.76□□□□□ -0.21
VPS53-207ENST00000570510 UTYO14607 1347 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 GAKO14976 1311 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 DNM1LO00429 736 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 PEX10O60683 326 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 ERVK-9P63128 1117 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 ERVK-24P63145 666 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 CCNA1P78396 465 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 LPAR1Q92633 364 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 BADQ92934 168 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 SIL1Q9H173 461 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 TXNRD2Q9NNW7 524 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 IVNS1ABPQ9Y6Y0 642 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 PRUNE2Q8WUY3 3088 aa13.75□□□□□ -0.21
VPS53-207ENST00000570510 C19orf81C9J6K1 198 aa13.74□□□□□ -0.21
VPS53-207ENST00000570510 ANP32CO43423 234 aa13.74□□□□□ -0.21
VPS53-207ENST00000570510 HOXA7P31268 230 aaPredicted RBP13.74□□□□□ -0.21
VPS53-207ENST00000570510 BACE1P56817 501 aa13.74□□□□□ -0.21
VPS53-207ENST00000570510 MAP2K5Q13163 448 aa13.74□□□□□ -0.21
VPS53-207ENST00000570510 MORN1Q5T089 497 aa13.74□□□□□ -0.21
VPS53-207ENST00000570510 PPM1EQ8WY54 764 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms