RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SLC9C2Q5TAH2 1124 aa24.65■■□□□ 1.54
CLK3-225ENST00000569063 ERO1AQ96HE7 468 aa24.65■■□□□ 1.54
CLK3-225ENST00000569063 CDK5RAP2Q96SN8 1893 aa24.65■■□□□ 1.54
CLK3-225ENST00000569063 PCDHB15Q9Y5E8 787 aa24.65■■□□□ 1.54
CLK3-225ENST00000569063 SMARCA5O60264 1052 aaPredicted RBP24.64■■□□□ 1.54
CLK3-225ENST00000569063 TLR2O60603 784 aa24.64■■□□□ 1.54
CLK3-225ENST00000569063 PDE6AP16499 860 aa24.64■■□□□ 1.54
CLK3-225ENST00000569063 FOXP4Q8IVH2 680 aaPredicted RBP24.64■■□□□ 1.54
CLK3-225ENST00000569063 HAUS7Q99871 368 aa24.64■■□□□ 1.54
CLK3-225ENST00000569063 BOLA2Q9H3K6 86 aa24.64■■□□□ 1.54
CLK3-225ENST00000569063 DOCK1Q14185 1865 aa24.64■■□□□ 1.53
CLK3-225ENST00000569063 A0A0G2JLL6 359 aaPredicted RBP24.63■■□□□ 1.53
CLK3-225ENST00000569063 FBXO46Q6PJ61 603 aaPredicted RBP24.63■■□□□ 1.53
CLK3-225ENST00000569063 PRRT2Q7Z6L0 340 aaPredicted RBP24.63■■□□□ 1.53
CLK3-225ENST00000569063 RIOK1Q9BRS2 568 aaKnown RBP24.63■■□□□ 1.53
CLK3-225ENST00000569063 PAG1Q9NWQ8 432 aa24.63■■□□□ 1.53
CLK3-225ENST00000569063 PALD1Q9ULE6 856 aa24.63■■□□□ 1.53
CLK3-225ENST00000569063 PDHXO00330 501 aa24.62■■□□□ 1.53
CLK3-225ENST00000569063 CAP2P40123 477 aa24.62■■□□□ 1.53
CLK3-225ENST00000569063 EDC3Q96F86 508 aaKnown RBP24.62■■□□□ 1.53
CLK3-225ENST00000569063 HPS5Q9UPZ3 1129 aa24.62■■□□□ 1.53
CLK3-225ENST00000569063 MAGEB6P1A0A0J9YX57 407 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 TCRBV5S4A2TA0A5A2 114 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 USP5P45974 858 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 RRP1BQ14684 758 aaKnown RBP24.61■■□□□ 1.53
CLK3-225ENST00000569063 GPAT2Q6NUI2 795 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 FASTKD5Q7L8L6 764 aaKnown RBP24.61■■□□□ 1.53
CLK3-225ENST00000569063 OTOP1Q7RTM1 612 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 CD99L2Q8TCZ2 262 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 SAP30BPQ9UHR5 308 aaKnown RBP24.61■■□□□ 1.53
CLK3-225ENST00000569063 TRIM17Q9Y577 477 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 SIPA1L1O43166 1804 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 ZNF532Q9HCE3 1301 aa24.61■■□□□ 1.53
CLK3-225ENST00000569063 TBC1D2Q9BYX2 928 aa24.6■■□□□ 1.53
CLK3-225ENST00000569063 DNAJC18Q9H819 358 aa24.6■■□□□ 1.53
CLK3-225ENST00000569063 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.6■■□□□ 1.53
CLK3-225ENST00000569063 PHIPQ8WWQ0 1821 aa24.59■■□□□ 1.53
CLK3-225ENST00000569063 HLA-DOAP06340 250 aa24.59■■□□□ 1.53
CLK3-225ENST00000569063 CRACR2BQ8N4Y2 399 aaPredicted RBP24.59■■□□□ 1.53
CLK3-225ENST00000569063 CRBNQ96SW2 442 aa24.59■■□□□ 1.53
CLK3-225ENST00000569063 ECHDC1Q9NTX5 307 aa24.59■■□□□ 1.53
CLK3-225ENST00000569063 TRIM75PA6NK02 468 aa24.58■■□□□ 1.53
CLK3-225ENST00000569063 CAP1Q01518 475 aa24.58■■□□□ 1.53
CLK3-225ENST00000569063 CCDC84Q86UT8 332 aaPredicted RBP24.58■■□□□ 1.53
CLK3-225ENST00000569063 TRIM34Q9BYJ4 488 aa24.58■■□□□ 1.53
CLK3-225ENST00000569063 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.58■■□□□ 1.533e-7■■□□□ 14
CLK3-225ENST00000569063 EFCC1Q9HA90 598 aa24.58■■□□□ 1.53
CLK3-225ENST00000569063 SLC45A1Q9Y2W3 748 aa24.58■■□□□ 1.53
CLK3-225ENST00000569063 ADD2P35612 726 aa24.57■■□□□ 1.52
CLK3-225ENST00000569063 RGS19P49795 217 aa24.57■■□□□ 1.52
CLK3-225ENST00000569063 ARHGEF6Q15052 776 aa24.57■■□□□ 1.52
CLK3-225ENST00000569063 C17orf99Q6UX52 265 aa24.57■■□□□ 1.52
CLK3-225ENST00000569063 GINM1Q9NU53 330 aa24.57■■□□□ 1.52
CLK3-225ENST00000569063 ADGRA2Q96PE1 1338 aa24.57■■□□□ 1.52
CLK3-225ENST00000569063 USP17L5A8MUK1 530 aa24.56■■□□□ 1.52
CLK3-225ENST00000569063 ZNF280CQ8ND82 737 aa24.56■■□□□ 1.52
CLK3-225ENST00000569063 PARK7Q99497 189 aaKnown RBP24.56■■□□□ 1.52
CLK3-225ENST00000569063 CRNKL1Q9BZJ0 848 aaKnown RBP24.56■■□□□ 1.52
CLK3-225ENST00000569063 EHD4Q9H223 541 aa24.56■■□□□ 1.52
CLK3-225ENST00000569063 PTPN22Q9Y2R2 807 aa24.56■■□□□ 1.52
CLK3-225ENST00000569063 ASNSP08243 561 aa24.55■■□□□ 1.52
CLK3-225ENST00000569063 SPP2Q13103 211 aa24.55■■□□□ 1.52
CLK3-225ENST00000569063 GADL1Q6ZQY3 521 aa24.55■■□□□ 1.52
CLK3-225ENST00000569063 TTC6Q86TZ1 520 aa24.55■■□□□ 1.52
CLK3-225ENST00000569063 GPATCH3Q96I76 525 aa24.55■■□□□ 1.52
CLK3-225ENST00000569063 SERPINB13Q9UIV8 391 aa24.55■■□□□ 1.52
CLK3-225ENST00000569063 ATAD5Q96QE3 1844 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 JAG1P78504 1218 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 LACTBP83111 547 aaPredicted RBP24.54■■□□□ 1.52
CLK3-225ENST00000569063 UBE3CQ15386 1083 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 SLC4A8Q2Y0W8 1093 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 TATDN1Q6P1N9 297 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 WDR18Q9BV38 432 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 AS3MTQ9HBK9 375 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 CPA4Q9UI42 421 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 AGTPBP1Q9UPW5 1226 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 PTPRFP10586 1907 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 MYH1P12882 1939 aa24.54■■□□□ 1.52
CLK3-225ENST00000569063 KIF22Q14807 665 aa24.53■■□□□ 1.52
CLK3-225ENST00000569063 LCORLQ8N3X6 602 aa24.53■■□□□ 1.52
CLK3-225ENST00000569063 PROCA1Q8NCQ7 364 aaPredicted RBP24.53■■□□□ 1.52
CLK3-225ENST00000569063 CYP2C8P10632 490 aa24.52■■□□□ 1.52
CLK3-225ENST00000569063 AAMPQ13685 434 aa24.52■■□□□ 1.52
CLK3-225ENST00000569063 SLFNL1Q499Z3 407 aa24.52■■□□□ 1.52
CLK3-225ENST00000569063 ZSCAN25Q6NSZ9 544 aa24.52■■□□□ 1.52
CLK3-225ENST00000569063 GNRH1P01148 92 aa24.51■■□□□ 1.51
CLK3-225ENST00000569063 PLCD1P51178 756 aa24.51■■□□□ 1.51
CLK3-225ENST00000569063 SH3D19Q5HYK7 790 aa24.51■■□□□ 1.51
CLK3-225ENST00000569063 ARHGAP39Q9C0H5 1083 aa24.51■■□□□ 1.51
CLK3-225ENST00000569063 ARMT1Q9H993 441 aa24.51■■□□□ 1.51
CLK3-225ENST00000569063 DCP1AQ9NPI6 582 aaPredicted RBP24.51■■□□□ 1.51
CLK3-225ENST00000569063 ZBTB21Q9ULJ3 1066 aa24.51■■□□□ 1.51
CLK3-225ENST00000569063 DDX60LQ5H9U9 1706 aaKnown RBP24.51■■□□□ 1.51
CLK3-225ENST00000569063 MBD4O95243 580 aa24.5■■□□□ 1.51
CLK3-225ENST00000569063 GDF11O95390 407 aa24.5■■□□□ 1.51
CLK3-225ENST00000569063 POLR3DP05423 398 aaPredicted RBP24.5■■□□□ 1.51
CLK3-225ENST00000569063 BCRP11274 1271 aa24.5■■□□□ 1.51
CLK3-225ENST00000569063 HDAC1Q13547 482 aaPredicted RBP24.5■■□□□ 1.51
CLK3-225ENST00000569063 SDR42E1Q8WUS8 393 aa24.5■■□□□ 1.51
CLK3-225ENST00000569063 TTC41PQ6P2S7 1318 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 272.5 ms