RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 BPIFA3Q9BQP9 254 aa16.51■□□□□ 0.23
VPS35-210ENST00000568784 IRS4O14654 1257 aaPredicted RBP16.51■□□□□ 0.23
VPS35-210ENST00000568784 TCIRG1Q13488 830 aa16.51■□□□□ 0.23
VPS35-210ENST00000568784 TRIM34Q9BYJ4 488 aa16.51■□□□□ 0.23
VPS35-210ENST00000568784 TUBGCP6Q96RT7 1819 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 GOLGA6L9A6NEM1 432 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 XBP1P17861 261 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 OXER1Q8TDS5 423 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 JCADQ9P266 1359 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 TSR1Q2NL82 804 aaKnown RBP16.5■□□□□ 0.23
VPS35-210ENST00000568784 RESP18Q5W5W9 173 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 TRIM65Q6PJ69 517 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 LEKR1Q6ZMV7 388 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 ANKRD20A12PQ8NF67 263 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 CSRNP2Q9H175 543 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 UBN2Q6ZU65 1347 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 TTF1Q15361 905 aaPredicted RBP16.5■□□□□ 0.23
VPS35-210ENST00000568784 EPSTI1Q96J88 318 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 RFX7Q2KHR2 1363 aa16.5■□□□□ 0.23
VPS35-210ENST00000568784 FAM205CA6NFA0 338 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 PPP6R2O75170 966 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 ADD2P35612 726 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 RRAGBQ5VZM2 374 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 PLIN2Q99541 437 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 GUCA1BQ9UMX6 200 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 TUBB4AP04350 444 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 CC2D1AQ6P1N0 951 aaPredicted RBP16.49■□□□□ 0.23
VPS35-210ENST00000568784 CDC5LQ99459 802 aaKnown RBP16.49■□□□□ 0.23
VPS35-210ENST00000568784 ACRBPQ8NEB7 543 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 CAGE1Q8TC20 777 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 TMEM87BQ96K49 555 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 MRPL44Q9H9J2 332 aaKnown RBP16.49■□□□□ 0.23
VPS35-210ENST00000568784 CTNND2Q9UQB3 1225 aa16.49■□□□□ 0.23
VPS35-210ENST00000568784 A0A0U1RQJ8 604 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 TRIM75PA6NK02 468 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 RBL2Q08999 1139 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 IFNL3Q8IZI9 196 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 GPR161Q8N6U8 529 aaKnown RBP16.48■□□□□ 0.23
VPS35-210ENST00000568784 ATRIPQ8WXE1 791 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 TUBE1Q9UJT0 475 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 ERLIN1O75477 346 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 CAPN2P17655 700 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 CASP14P31944 242 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 LONRF2Q1L5Z9 754 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 PLCD3Q8N3E9 789 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 MLKLQ8NB16 471 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 CAPZA3Q96KX2 299 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 SLF1Q9BQI6 1058 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 PDE11AQ9HCR9 933 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 SLIT1O75093 1534 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 TOPAZ1Q8N9V7 1692 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 FOXP2O15409 715 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 IRX5P78411 483 aaPredicted RBP16.48■□□□□ 0.23
VPS35-210ENST00000568784 LRP10Q7Z4F1 713 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 SDR42E1Q8WUS8 393 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 ASAP1Q9ULH1 1129 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 CEP131Q9UPN4 1083 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 LRRC37A3O60309 1634 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 STX10O60499 249 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 CIAO1O76071 339 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 STARD3NLO95772 234 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 BMP6P22004 513 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 PTPAQ15257 358 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 SUGCTQ9HAC7 445 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 TAB2Q9NYJ8 693 aa16.48■□□□□ 0.23
VPS35-210ENST00000568784 BAZ2BQ9UIF8 2168 aaKnown RBP16.47■□□□□ 0.23
VPS35-210ENST00000568784 CDC25AP30304 524 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 RILPL1Q5EBL4 403 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 TXLNBQ8N3L3 684 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 V9GY48 417 aaPredicted RBP16.47■□□□□ 0.23
VPS35-210ENST00000568784 SYNRGQ9UMZ2 1314 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 SASH3O75995 380 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 HLFQ16534 295 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 ZSCAN26Q16670 478 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 CCDC93Q567U6 631 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 TC2NQ8N9U0 490 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 BRMS1Q9HCU9 246 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 INTS13Q9NVM9 706 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 CTAGE9A4FU28 777 aa16.47■□□□□ 0.23
VPS35-210ENST00000568784 ANKRD65E5RJM6 399 aa16.46■□□□□ 0.23
VPS35-210ENST00000568784 HSD3B7Q9H2F3 369 aa16.46■□□□□ 0.23
VPS35-210ENST00000568784 AKNAD1Q5T1N1 836 aa16.46■□□□□ 0.23
VPS35-210ENST00000568784 LY9Q9HBG7 655 aa16.46■□□□□ 0.23
VPS35-210ENST00000568784 CWC15Q9P013 229 aaKnown RBP16.46■□□□□ 0.23
VPS35-210ENST00000568784 CCDC196A0A1B0GTZ2 297 aa16.46■□□□□ 0.22
VPS35-210ENST00000568784 CYP7A1P22680 504 aa16.46■□□□□ 0.22
VPS35-210ENST00000568784 CYP2C19P33261 490 aa16.46■□□□□ 0.22
VPS35-210ENST00000568784 SLC35F6Q8N357 371 aa16.46■□□□□ 0.22
VPS35-210ENST00000568784 RABEP2Q9H5N1 569 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 MEGF6O75095 1541 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 RGPD2P0DJD1 1756 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 CTAGE15A4D2H0 777 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 FANCGO15287 622 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 CTAGE8P0CG41 777 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 MCM7P33993 719 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 FKBP15Q5T1M5 1219 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 CTAGE6Q86UF2 777 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 CTAGE4Q8IX94 777 aa16.45■□□□□ 0.22
VPS35-210ENST00000568784 EIF3JO75822 258 aaKnown RBP16.45■□□□□ 0.22
VPS35-210ENST00000568784 TBC1D8O95759 1140 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms