RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TCP10Q12799 353 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 TNFAIP1Q13829 316 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 EAPPQ56P03 285 aaPredicted RBP10.09□□□□□ -0.79
SF3B3-212ENST00000568539 CTR9Q6PD62 1173 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 APOBEC3FQ8IUX4 373 aaKnown RBP10.09□□□□□ -0.79
SF3B3-212ENST00000568539 ZFPM1Q8IX07 1006 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 FAM151AQ8WW52 585 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 DDRGK1Q96HY6 314 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 USP26Q9BXU7 913 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 NAPBQ9H115 298 aa10.09□□□□□ -0.79
SF3B3-212ENST00000568539 RBM8AQ9Y5S9 174 aaKnown RBP10.09□□□□□ -0.79
SF3B3-212ENST00000568539 USP17L12C9JPN9 530 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 USP17L21D6R901 530 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 TOMM70O94826 608 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 POTEIP0CG38 1075 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 POTEJP0CG39 1038 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 TNNI2P48788 182 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 RASA3Q14644 834 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 NECTIN1Q15223 517 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 SBK1Q52WX2 424 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 SH3BP5LQ7L8J4 393 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 DCPSQ96C86 337 aaKnown RBP10.08□□□□□ -0.8
SF3B3-212ENST00000568539 DEFB129Q9H1M3 183 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 MCM9Q9NXL9 1143 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 ARPP21Q9UBL0 812 aaPredicted RBP10.08□□□□□ -0.8
SF3B3-212ENST00000568539 SAP30BPQ9UHR5 308 aaKnown RBP10.08□□□□□ -0.8
SF3B3-212ENST00000568539 CTNNA3Q9UI47 895 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 PALD1Q9ULE6 856 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 SCAF8Q9UPN6 1271 aaKnown RBP10.08□□□□□ -0.8
SF3B3-212ENST00000568539 ATRNL1Q5VV63 1379 aa10.08□□□□□ -0.8
SF3B3-212ENST00000568539 COL2A1P02458 1487 aaPredicted RBP10.08□□□□□ -0.8
SF3B3-212ENST00000568539 CYP2D7A0A087X1C5 515 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 DDTLA6NHG4 134 aaPredicted RBP10.07□□□□□ -0.8
SF3B3-212ENST00000568539 HSPA1AP0DMV8 641 aaKnown RBP10.07□□□□□ -0.8
SF3B3-212ENST00000568539 HSPA1BP0DMV9 641 aaKnown RBP10.07□□□□□ -0.8
SF3B3-212ENST00000568539 CYP2D6P10635 497 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 HSPA4P34932 840 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 EVX2Q03828 476 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 NBR1Q14596 966 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 C12orf60Q5U649 245 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 LDHDQ86WU2 507 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 FBXO22Q8NEZ5 403 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 TEPSINQ96N21 525 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 TMEM39BQ9GZU3 492 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 DHX36Q9H2U1 1008 aaKnown RBP10.07□□□□□ -0.8
SF3B3-212ENST00000568539 PPP2R3BQ9Y5P8 575 aa10.07□□□□□ -0.8
SF3B3-212ENST00000568539 MYH7P12883 1935 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 ROBO3Q96MS0 1386 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 SCN4AP35499 1836 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 MINDY4BA8MYZ0 360 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 ADM5C9JUS6 153 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 SMIM22K7EJ46 135 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 ZNF213O14771 459 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 SLC27A2O14975 620 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 POLR3DP05423 398 aaPredicted RBP10.06□□□□□ -0.8
SF3B3-212ENST00000568539 CYP21A2P08686 494 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 PLCD1P51178 756 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 PPARAQ07869 468 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 IMMTQ16891 758 aaKnown RBP10.06□□□□□ -0.8
SF3B3-212ENST00000568539 SLC4A8Q2Y0W8 1093 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 TPRNQ4KMQ1 711 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 KRT26Q7Z3Y9 468 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 TTC6Q86TZ1 520 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 SULF1Q8IWU6 871 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 ZSCAN29Q8IWY8 852 aaPredicted RBP10.06□□□□□ -0.8
SF3B3-212ENST00000568539 CDAN1Q8IWY9 1227 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 AMOTL1Q8IY63 956 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 CSRNP1Q96S65 589 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 NBPF3Q9H094 633 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 ANAPC4Q9UJX5 808 aa10.06□□□□□ -0.8
SF3B3-212ENST00000568539 AK9Q5TCS8 1911 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 MYH2Q9UKX2 1941 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 DDX60LQ5H9U9 1706 aaKnown RBP10.05□□□□□ -0.8
SF3B3-212ENST00000568539 HLA-DOAP06340 250 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 CD44P16070 742 aaKnown RBP10.05□□□□□ -0.8
SF3B3-212ENST00000568539 HAND2P61296 217 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 GABPAQ06546 454 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 MAP1SQ66K74 1059 aaPredicted RBP10.05□□□□□ -0.8
SF3B3-212ENST00000568539 CREB3L3Q68CJ9 461 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 DLK2Q6UY11 383 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 CDC37L1Q7L3B6 337 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 METTL16Q86W50 562 aaKnown RBP10.05□□□□□ -0.8
SF3B3-212ENST00000568539 TBC1D10CQ8IV04 446 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 KCNB2Q92953 911 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 GLIS2Q9BZE0 524 aaPredicted RBP10.05□□□□□ -0.8
SF3B3-212ENST00000568539 EHD4Q9H223 541 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 PI4KBQ9UBF8 816 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 SERPINB13Q9UIV8 391 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 TAF6LQ9Y6J9 622 aa10.05□□□□□ -0.8
SF3B3-212ENST00000568539 SLURP2P0DP57 97 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 MCCP23508 829 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 MAP3K10Q02779 954 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 CTDSPL2Q05D32 466 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 TSGA10IPQ3SY00 556 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 NBPF12Q5TAG4 269 aaPredicted RBP10.04□□□□□ -0.8
SF3B3-212ENST00000568539 RNF20Q5VTR2 975 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 PRAMEF18Q5VWM3 479 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 C16orf86Q6ZW13 317 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 USP48Q86UV5 1035 aa10.04□□□□□ -0.8
SF3B3-212ENST00000568539 FOXP4Q8IVH2 680 aaPredicted RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms