RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ZSCAN29Q8IWY8 852 aaPredicted RBP14.8□□□□□ -0.04
CLK3-222ENST00000568232 WDR66Q8TBY9 1149 aa14.8□□□□□ -0.04
CLK3-222ENST00000568232 PNMA3Q9UL41 463 aa14.8□□□□□ -0.04
CLK3-222ENST00000568232 FGFR2P21802 821 aa14.79□□□□□ -0.04
CLK3-222ENST00000568232 CCND3P30281 292 aaPredicted RBP14.79□□□□□ -0.04
CLK3-222ENST00000568232 MAP3K10Q02779 954 aa14.79□□□□□ -0.04
CLK3-222ENST00000568232 CACNB2Q08289 660 aaPredicted RBP14.79□□□□□ -0.04
CLK3-222ENST00000568232 LHX8Q68G74 356 aa14.79□□□□□ -0.04
CLK3-222ENST00000568232 SLC4A10Q6U841 1118 aa14.79□□□□□ -0.04
CLK3-222ENST00000568232 WWC1Q8IX03 1113 aa14.79□□□□□ -0.04
CLK3-222ENST00000568232 LBHD1Q9BQE6 289 aaPredicted RBP14.79□□□□□ -0.04
CLK3-222ENST00000568232 BICC1Q9H694 974 aaKnown RBP14.79□□□□□ -0.04
CLK3-222ENST00000568232 IFIT1P09914 478 aaKnown RBP14.78□□□□□ -0.04
CLK3-222ENST00000568232 GCLCP48506 637 aaPredicted RBP14.78□□□□□ -0.04
CLK3-222ENST00000568232 SPP2Q13103 211 aa14.78□□□□□ -0.04
CLK3-222ENST00000568232 ASCC2Q9H1I8 757 aaPredicted RBP14.78□□□□□ -0.04
CLK3-222ENST00000568232 FANCIQ9NVI1 1328 aa14.77□□□□□ -0.04
CLK3-222ENST00000568232 PTPRFP10586 1907 aa14.77□□□□□ -0.04
CLK3-222ENST00000568232 FAM196BA6NMK8 535 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 ENTPD3O75355 529 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 ALDH1L1O75891 902 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 LDHBP07195 334 aaKnown RBP14.77□□□□□ -0.05
CLK3-222ENST00000568232 HMGCS2P54868 508 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 PUM3Q15397 648 aaKnown RBP14.77□□□□□ -0.05
CLK3-222ENST00000568232 SHHQ15465 462 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 ANKRD44Q8N8A2 993 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 PROCA1Q8NCQ7 364 aaPredicted RBP14.77□□□□□ -0.05
CLK3-222ENST00000568232 IDI2Q9BXS1 227 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 SRCIN1Q9C0H9 1055 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 SENP6Q9GZR1 1112 aaPredicted RBP14.77□□□□□ -0.05
CLK3-222ENST00000568232 TTYH1Q9H313 450 aaPredicted RBP14.77□□□□□ -0.05
CLK3-222ENST00000568232 DDX4Q9NQI0 724 aaKnown RBP14.77□□□□□ -0.05
CLK3-222ENST00000568232 PLXNB2O15031 1838 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 PHIPQ8WWQ0 1821 aa14.77□□□□□ -0.05
CLK3-222ENST00000568232 ATN1P54259 1190 aaPredicted RBP14.76□□□□□ -0.05
CLK3-222ENST00000568232 EXOSC9Q06265 439 aaKnown RBP14.76□□□□□ -0.05
CLK3-222ENST00000568232 PICALMQ13492 652 aa14.76□□□□□ -0.05
CLK3-222ENST00000568232 CCL14Q16627 93 aa14.76□□□□□ -0.05
CLK3-222ENST00000568232 RABL6Q3YEC7 729 aaPredicted RBP14.76□□□□□ -0.05
CLK3-222ENST00000568232 C9orf50Q5SZB4 431 aa14.76□□□□□ -0.05
CLK3-222ENST00000568232 SYMPKQ92797 1274 aaKnown RBP14.76□□□□□ -0.05
CLK3-222ENST00000568232 FARP1Q9Y4F1 1045 aaPredicted RBP14.76□□□□□ -0.05
CLK3-222ENST00000568232 KIF16BQ96L93 1317 aa14.75□□□□□ -0.05
CLK3-222ENST00000568232 FOSL2P15408 326 aa14.75□□□□□ -0.05
CLK3-222ENST00000568232 NUDT12Q9BQG2 462 aa14.75□□□□□ -0.05
CLK3-222ENST00000568232 MORF4L1Q9UBU8 362 aa14.75□□□□□ -0.05
CLK3-222ENST00000568232 DOCK2Q92608 1830 aa14.75□□□□□ -0.05
CLK3-222ENST00000568232 RFX7Q2KHR2 1363 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 TTC28Q96AY4 2481 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 DOCK1Q14185 1865 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 TNFRSF10AO00220 468 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 XRCC5P13010 732 aaKnown RBP14.74□□□□□ -0.05
CLK3-222ENST00000568232 SLC5A1P13866 664 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 ZKSCAN1P17029 563 aaPredicted RBP14.74□□□□□ -0.05
CLK3-222ENST00000568232 CCDC27Q2M243 656 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 ZNF280CQ8ND82 737 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 TXNRD2Q9NNW7 524 aa14.74□□□□□ -0.05
CLK3-222ENST00000568232 IL16Q14005 1332 aa14.73□□□□□ -0.05
CLK3-222ENST00000568232 PABPC4Q13310 644 aaKnown RBP eCLIP14.73□□□□□ -0.05
CLK3-222ENST00000568232 RRP1BQ14684 758 aaKnown RBP14.73□□□□□ -0.05
CLK3-222ENST00000568232 LPIN2Q92539 896 aa14.73□□□□□ -0.05
CLK3-222ENST00000568232 P2RX7Q99572 595 aaKnown RBP14.73□□□□□ -0.05
CLK3-222ENST00000568232 UTYO14607 1347 aa14.72□□□□□ -0.05
CLK3-222ENST00000568232 Q3C1V9 767 aa14.72□□□□□ -0.05
CLK3-222ENST00000568232 USP38Q8NB14 1042 aa14.72□□□□□ -0.05
CLK3-222ENST00000568232 SOCS4Q8WXH5 440 aa14.72□□□□□ -0.05
CLK3-222ENST00000568232 USP6NLQ92738 828 aa14.72□□□□□ -0.05
CLK3-222ENST00000568232 PRKRIP1Q9H875 184 aaPredicted RBP14.72□□□□□ -0.05
CLK3-222ENST00000568232 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.72□□□□□ -0.05
CLK3-222ENST00000568232 PRKAG2Q9UGJ0 569 aa14.72□□□□□ -0.05
CLK3-222ENST00000568232 GAKO14976 1311 aa14.71□□□□□ -0.05
CLK3-222ENST00000568232 RTP1P59025 263 aa14.71□□□□□ -0.05
CLK3-222ENST00000568232 SH3D19Q5HYK7 790 aa14.71□□□□□ -0.05
CLK3-222ENST00000568232 TJAP1Q5JTD0 557 aa14.71□□□□□ -0.05
CLK3-222ENST00000568232 TRMT44Q8IYL2 757 aaKnown RBP14.71□□□□□ -0.05
CLK3-222ENST00000568232 GPRC5AQ8NFJ5 357 aa14.71□□□□□ -0.05
CLK3-222ENST00000568232 PORCNQ9H237 461 aa14.71□□□□□ -0.05
CLK3-222ENST00000568232 LOC285556D6RIA3 1793 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 SALL1Q9NSC2 1324 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 TBC1D12O60347 775 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 BTDP43251 543 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 IRX3P78415 501 aaPredicted RBP14.7□□□□□ -0.06
CLK3-222ENST00000568232 SMAD3P84022 425 aaKnown RBP14.7□□□□□ -0.06
CLK3-222ENST00000568232 PDE3AQ14432 1141 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 MORN1Q5T089 497 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 BADQ92934 168 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 OSBPL5Q9H0X9 879 aaPredicted RBP14.7□□□□□ -0.06
CLK3-222ENST00000568232 RBPJLQ9UBG7 517 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 ATP11BQ9Y2G3 1177 aa14.7□□□□□ -0.06
CLK3-222ENST00000568232 USP17L5A8MUK1 530 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 EYA2O00167 538 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 PLA2G5P39877 138 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 CAP2P40123 477 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 RGS2P41220 211 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 PHKA1P46020 1223 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 HERVK_113P62684 666 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 POTEEQ6S8J3 1075 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 ATG9AQ7Z3C6 839 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 GPR142Q7Z601 462 aa14.69□□□□□ -0.06
CLK3-222ENST00000568232 PRDM5Q9NQX1 630 aaPredicted RBP14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms