RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PAK6Q9NQU5 681 aaPredicted RBP5.27□□□□□ -1.57
VPS35-207ENST00000568191 SNX11Q9Y5W9 270 aa5.27□□□□□ -1.57
VPS35-207ENST00000568191 IGF2BP3O00425 579 aaKnown RBP eCLIP5.26□□□□□ -1.57
VPS35-207ENST00000568191 CEACAM5P06731 702 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 CELA3AP09093 270 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 ERCC3P19447 782 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 AOC3Q16853 763 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 ZBTB37Q5TC79 503 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 ANGEL2Q5VTE6 544 aaKnown RBP5.26□□□□□ -1.57
VPS35-207ENST00000568191 ZNF746Q6NUN9 644 aaPredicted RBP5.26□□□□□ -1.57
VPS35-207ENST00000568191 PLD6Q8N2A8 252 aaKnown RBP5.26□□□□□ -1.57
VPS35-207ENST00000568191 FAM181AQ8N9Y4 354 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 PI4K2BQ8TCG2 481 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 ASB11Q8WXH4 323 aa5.26□□□□□ -1.57
VPS35-207ENST00000568191 DUSP9Q99956 384 aaKnown RBP5.26□□□□□ -1.57
VPS35-207ENST00000568191 PRAMEF27A3QJZ7 478 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 LEFTY1O75610 366 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 LRIG2O94898 1065 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 ITIH2P19823 946 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 MFSD2AQ8NA29 543 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 FMNL2Q96PY5 1086 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 MIR1-1HGQ9H1L0 117 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 MRS2Q9HD23 443 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 PRDM5Q9NQX1 630 aaPredicted RBP5.25□□□□□ -1.57
VPS35-207ENST00000568191 TPX2Q9ULW0 747 aaKnown RBP5.25□□□□□ -1.57
VPS35-207ENST00000568191 TACC3Q9Y6A5 838 aa5.25□□□□□ -1.57
VPS35-207ENST00000568191 FAM155AB1AL88 458 aaPredicted RBP5.24□□□□□ -1.57
VPS35-207ENST00000568191 CYP7A1P22680 504 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 OXCT1P55809 520 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 RING1Q06587 406 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 MPRIPQ6WCQ1 1025 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 ARMCX6Q7L4S7 300 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 HID1Q8IV36 788 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 KRTAP9-9Q9BYP9 154 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 KRTAP9-4Q9BYQ2 154 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 FOXQ1Q9C009 403 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 WNT10AQ9GZT5 417 aa5.24□□□□□ -1.57
VPS35-207ENST00000568191 YBX3P16989 372 aaKnown RBP eCLIP5.23□□□□□ -1.57
VPS35-207ENST00000568191 FUT4P22083 530 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 CLCN7P51798 805 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 PDE4BQ07343 736 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 BNIP3Q12983 259 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 TAF1CQ15572 869 aaPredicted RBP5.23□□□□□ -1.57
VPS35-207ENST00000568191 WIPI1Q5MNZ9 446 aaPredicted RBP5.23□□□□□ -1.57
VPS35-207ENST00000568191 LRFN4Q6PJG9 635 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 CBLL1Q75N03 491 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 CYFIP1Q7L576 1253 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 PLPPR2Q96GM1 343 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 COX4I2Q96KJ9 171 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 GOLGA2P5Q9HBQ8 144 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 PARP2Q9UGN5 583 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 MAPK8IP1Q9UQF2 711 aa5.23□□□□□ -1.57
VPS35-207ENST00000568191 CD8BP10966 210 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 CAP2P40123 477 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 ST13P50502 369 aaKnown RBP5.22□□□□□ -1.57
VPS35-207ENST00000568191 IKZF1Q13422 519 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 INPP5AQ14642 412 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 MAP3K11Q16584 847 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 TSNAXIP1Q2TAA8 658 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 ZNF792Q3KQV3 632 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 SFRP5Q5T4F7 317 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 AGMOQ6ZNB7 445 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 SPRED2Q7Z698 418 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 KRTAP19-1Q8IUB9 90 aa5.22□□□□□ -1.57
VPS35-207ENST00000568191 NOC4LQ9BVI4 516 aaKnown RBP5.22□□□□□ -1.57
VPS35-207ENST00000568191 RC3H2Q9HBD1 1191 aaKnown RBP5.22□□□□□ -1.57
VPS35-207ENST00000568191 SORBS3O60504 671 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 BPNT1O95861 308 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 LIG3P49916 1009 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 DAB2P98082 770 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 PWP1Q13610 501 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 CCDC27Q2M243 656 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 SLC23A3Q6PIS1 610 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 ZNF574Q6ZN55 896 aaPredicted RBP5.21□□□□□ -1.58
VPS35-207ENST00000568191 ATG4DQ86TL0 474 aaPredicted RBP5.21□□□□□ -1.58
VPS35-207ENST00000568191 HEXIM2Q96MH2 286 aaKnown RBP5.21□□□□□ -1.58
VPS35-207ENST00000568191 MIPEPQ99797 713 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 TNKS2Q9H2K2 1166 aa5.21□□□□□ -1.58
VPS35-207ENST00000568191 ITGB5P18084 799 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 GRK4P32298 578 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 NTF4P34130 210 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 RASIP1Q5U651 963 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 LETMD1Q6P1Q0 360 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 TMC4Q7Z404 712 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 CCDC84Q86UT8 332 aaPredicted RBP5.2□□□□□ -1.58
VPS35-207ENST00000568191 RELL1Q8IUW5 271 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 JARID2Q92833 1246 aaPredicted RBP5.2□□□□□ -1.58
VPS35-207ENST00000568191 CCDC120Q96HB5 630 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 PLAGL2Q9UPG8 496 aa5.2□□□□□ -1.58
VPS35-207ENST00000568191 CST3P01034 146 aaPredicted RBP5.19□□□□□ -1.58
VPS35-207ENST00000568191 PGRP06401 933 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 ETV3P41162 512 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 KIR3DL1P43629 444 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 RPL6Q02878 288 aaKnown RBP5.19□□□□□ -1.58
VPS35-207ENST00000568191 ZP2Q05996 745 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 PTPN11Q06124 597 aaPredicted RBP5.19□□□□□ -1.58
VPS35-207ENST00000568191 SEPT6Q14141 434 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 SLC6A19Q695T7 634 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 NFXL1Q6ZNB6 911 aa5.19□□□□□ -1.58
VPS35-207ENST00000568191 MFSD4AQ8N468 514 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms