RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 HLA-DOAP06340 250 aa22.68■■□□□ 1.22
CLN3-227ENST00000567495 DYNLL1P63167 89 aaKnown RBP22.68■■□□□ 1.22
CLN3-227ENST00000567495 SP3Q02447 781 aa22.68■■□□□ 1.22
CLN3-227ENST00000567495 ARHGEF6Q15052 776 aa22.68■■□□□ 1.22
CLN3-227ENST00000567495 FASTKD5Q7L8L6 764 aaKnown RBP22.68■■□□□ 1.22
CLN3-227ENST00000567495 METTL16Q86W50 562 aaKnown RBP22.68■■□□□ 1.22
CLN3-227ENST00000567495 ECHDC1Q9NTX5 307 aa22.68■■□□□ 1.22
CLN3-227ENST00000567495 MAST2Q6P0Q8 1798 aa22.68■■□□□ 1.22
CLN3-227ENST00000567495 CCDC85CA6NKD9 419 aa22.67■■□□□ 1.22
CLN3-227ENST00000567495 USP5P45974 858 aa22.67■■□□□ 1.22
CLN3-227ENST00000567495 TRIM34Q9BYJ4 488 aa22.67■■□□□ 1.22
CLN3-227ENST00000567495 AFG3L2Q9Y4W6 797 aa22.67■■□□□ 1.22
CLN3-227ENST00000567495 MAGEB6P1A0A0J9YX57 407 aa22.66■■□□□ 1.22
CLN3-227ENST00000567495 SMARCA5O60264 1052 aaPredicted RBP22.66■■□□□ 1.22
CLN3-227ENST00000567495 TLR2O60603 784 aa22.66■■□□□ 1.22
CLN3-227ENST00000567495 CAP2P40123 477 aa22.66■■□□□ 1.22
CLN3-227ENST00000567495 CRACR2BQ8N4Y2 399 aaPredicted RBP22.66■■□□□ 1.22
CLN3-227ENST00000567495 RIOK1Q9BRS2 568 aaKnown RBP22.66■■□□□ 1.22
CLN3-227ENST00000567495 GINM1Q9NU53 330 aa22.66■■□□□ 1.22
CLN3-227ENST00000567495 PALD1Q9ULE6 856 aa22.66■■□□□ 1.22
CLN3-227ENST00000567495 A0A0G2JLL6 359 aaPredicted RBP22.65■■□□□ 1.22
CLN3-227ENST00000567495 FBXO46Q6PJ61 603 aaPredicted RBP22.65■■□□□ 1.22
CLN3-227ENST00000567495 PRRT2Q7Z6L0 340 aaPredicted RBP22.65■■□□□ 1.22
CLN3-227ENST00000567495 CRBNQ96SW2 442 aa22.65■■□□□ 1.22
CLN3-227ENST00000567495 CRNKL1Q9BZJ0 848 aaKnown RBP22.65■■□□□ 1.22
CLN3-227ENST00000567495 ZNF532Q9HCE3 1301 aa22.64■■□□□ 1.22
CLN3-227ENST00000567495 FAM196BA6NMK8 535 aa22.64■■□□□ 1.21
CLN3-227ENST00000567495 PDHXO00330 501 aa22.64■■□□□ 1.21
CLN3-227ENST00000567495 SLURP2P0DP57 97 aa22.64■■□□□ 1.21
CLN3-227ENST00000567495 ZSCAN25Q6NSZ9 544 aa22.64■■□□□ 1.21
CLN3-227ENST00000567495 TTC6Q86TZ1 520 aa22.64■■□□□ 1.21
CLN3-227ENST00000567495 DOCK2Q92608 1830 aa22.64■■□□□ 1.21
CLN3-227ENST00000567495 TCRBV5S4A2TA0A5A2 114 aa22.63■■□□□ 1.21
CLN3-227ENST00000567495 ASNSP08243 561 aa22.63■■□□□ 1.21
CLN3-227ENST00000567495 MOGSQ13724 837 aa22.63■■□□□ 1.21
CLN3-227ENST00000567495 SAP30BPQ9UHR5 308 aaKnown RBP22.63■■□□□ 1.21
CLN3-227ENST00000567495 SLC45A1Q9Y2W3 748 aa22.63■■□□□ 1.21
CLN3-227ENST00000567495 USP17L5A8MUK1 530 aa22.62■■□□□ 1.21
CLN3-227ENST00000567495 UBE3CQ15386 1083 aa22.62■■□□□ 1.21
CLN3-227ENST00000567495 EDC3Q96F86 508 aaKnown RBP22.62■■□□□ 1.21
CLN3-227ENST00000567495 PARK7Q99497 189 aaKnown RBP22.62■■□□□ 1.21
CLN3-227ENST00000567495 EHD4Q9H223 541 aa22.62■■□□□ 1.21
CLN3-227ENST00000567495 AS3MTQ9HBK9 375 aa22.62■■□□□ 1.21
CLN3-227ENST00000567495 TRIM17Q9Y577 477 aa22.62■■□□□ 1.21
CLN3-227ENST00000567495 TRIM75PA6NK02 468 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 ADD2P35612 726 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 OTOP1Q7RTM1 612 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 ZNF280CQ8ND82 737 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 EFCC1Q9HA90 598 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 ZBTB47Q9UFB7 747 aaPredicted RBP22.61■■□□□ 1.21
CLN3-227ENST00000567495 SERPINB13Q9UIV8 391 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 TAOK2Q9UL54 1235 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 HPS5Q9UPZ3 1129 aa22.61■■□□□ 1.21
CLN3-227ENST00000567495 HDAC1Q13547 482 aaPredicted RBP22.6■■□□□ 1.21
CLN3-227ENST00000567495 KIF22Q14807 665 aa22.6■■□□□ 1.21
CLN3-227ENST00000567495 GPAT2Q6NUI2 795 aa22.6■■□□□ 1.21
CLN3-227ENST00000567495 CD99L2Q8TCZ2 262 aa22.6■■□□□ 1.21
CLN3-227ENST00000567495 TTC41PQ6P2S7 1318 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 ERC2O15083 957 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 SPP2Q13103 211 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 RRP1BQ14684 758 aaKnown RBP22.59■■□□□ 1.21
CLN3-227ENST00000567495 C17orf99Q6UX52 265 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 PROCA1Q8NCQ7 364 aaPredicted RBP22.59■■□□□ 1.21
CLN3-227ENST00000567495 GCC1Q96CN9 775 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 WDR18Q9BV38 432 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 DNAJC18Q9H819 358 aa22.59■■□□□ 1.21
CLN3-227ENST00000567495 GNRH1P01148 92 aa22.58■■□□□ 1.21
CLN3-227ENST00000567495 GADL1Q6ZQY3 521 aa22.58■■□□□ 1.21
CLN3-227ENST00000567495 POLR3DP05423 398 aaPredicted RBP22.57■■□□□ 1.2
CLN3-227ENST00000567495 LACTBP83111 547 aaPredicted RBP22.57■■□□□ 1.2
CLN3-227ENST00000567495 LRRFIP1Q32MZ4 808 aaKnown RBP22.57■■□□□ 1.2
CLN3-227ENST00000567495 ATP8A2Q9NTI2 1148 aa22.57■■□□□ 1.2
CLN3-227ENST00000567495 MCM9Q9NXL9 1143 aa22.57■■□□□ 1.2
CLN3-227ENST00000567495 AGTPBP1Q9UPW5 1226 aa22.57■■□□□ 1.2
CLN3-227ENST00000567495 GLRX3O76003 335 aaKnown RBP22.56■■□□□ 1.2
CLN3-227ENST00000567495 MBD4O95243 580 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 PABPC4Q13310 644 aaKnown RBP eCLIP22.56■■□□□ 1.2
CLN3-227ENST00000567495 TATDN1Q6P1N9 297 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 LCORLQ8N3X6 602 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 KBTBD3Q8NAB2 608 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 DDRGK1Q96HY6 314 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 DCP1AQ9NPI6 582 aaPredicted RBP22.56■■□□□ 1.2
CLN3-227ENST00000567495 FRMD4AQ9P2Q2 1039 aaPredicted RBP22.56■■□□□ 1.2
CLN3-227ENST00000567495 PTPN22Q9Y2R2 807 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 ADGRA2Q96PE1 1338 aa22.56■■□□□ 1.2
CLN3-227ENST00000567495 C19orf81C9J6K1 198 aa22.55■■□□□ 1.2
CLN3-227ENST00000567495 ZFYP08048 801 aaPredicted RBP22.55■■□□□ 1.2
CLN3-227ENST00000567495 SLC4A8Q2Y0W8 1093 aa22.55■■□□□ 1.2
CLN3-227ENST00000567495 SH3D19Q5HYK7 790 aa22.55■■□□□ 1.2
CLN3-227ENST00000567495 CCDC84Q86UT8 332 aaPredicted RBP22.55■■□□□ 1.2
CLN3-227ENST00000567495 ARMT1Q9H993 441 aa22.55■■□□□ 1.2
CLN3-227ENST00000567495 PNMA3Q9UL41 463 aa22.55■■□□□ 1.2
CLN3-227ENST00000567495 ZBTB21Q9ULJ3 1066 aa22.55■■□□□ 1.2
CLN3-227ENST00000567495 MYO5AQ9Y4I1 1855 aaKnown RBP22.55■■□□□ 1.2
CLN3-227ENST00000567495 RGS19P49795 217 aa22.54■■□□□ 1.2
CLN3-227ENST00000567495 BACE1P56817 501 aa22.54■■□□□ 1.2
CLN3-227ENST00000567495 AMOTL1Q8IY63 956 aa22.54■■□□□ 1.2
CLN3-227ENST00000567495 CPA4Q9UI42 421 aa22.54■■□□□ 1.2
CLN3-227ENST00000567495 DOCK1Q14185 1865 aa22.54■■□□□ 1.2
CLN3-227ENST00000567495 CYP2C8P10632 490 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms