RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 LBHD1Q9BQE6 289 aaPredicted RBP13.96□□□□□ -0.17
CLN3-226ENST00000567160 DOCK2Q92608 1830 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 EYSQ5T1H1 3165 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 PTPRAP18433 802 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 ANKRD44Q8N8A2 993 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 AGTPBP1Q9UPW5 1226 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 AFG3L2Q9Y4W6 797 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 MYH13Q9UKX3 1938 aa13.95□□□□□ -0.18
CLN3-226ENST00000567160 LAMA2P24043 3122 aaKnown RBP13.95□□□□□ -0.18
CLN3-226ENST00000567160 PFASO15067 1338 aa13.94□□□□□ -0.18
CLN3-226ENST00000567160 GCLCP48506 637 aaPredicted RBP13.94□□□□□ -0.18
CLN3-226ENST00000567160 CDX2Q99626 313 aaPredicted RBP13.94□□□□□ -0.18
CLN3-226ENST00000567160 DOCK1Q14185 1865 aa13.93□□□□□ -0.18
CLN3-226ENST00000567160 PCDHB15Q9Y5E8 787 aa13.93□□□□□ -0.18
CLN3-226ENST00000567160 PRUNE2Q8WUY3 3088 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 TRIM75PA6NK02 468 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 PHF20L1A8MW92 1017 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 COL6A1P12109 1028 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 PABPC4Q13310 644 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLN3-226ENST00000567160 AAMPQ13685 434 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 RABL6Q3YEC7 729 aaPredicted RBP13.92□□□□□ -0.18
CLN3-226ENST00000567160 METTL24Q5JXM2 366 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 CDC42EP5Q6NZY7 148 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 CEP85Q6P2H3 762 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 TRMT44Q8IYL2 757 aaKnown RBP13.92□□□□□ -0.18
CLN3-226ENST00000567160 WDR66Q8TBY9 1149 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 PHIPQ8WWQ0 1821 aa13.92□□□□□ -0.18
CLN3-226ENST00000567160 PNMA6EA0A0J9YXQ4 647 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 SRGAP3O43295 1099 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 CTNND1O60716 968 aaKnown RBP13.91□□□□□ -0.18
CLN3-226ENST00000567160 PRKAR2AP13861 404 aaKnown RBP13.91□□□□□ -0.18
CLN3-226ENST00000567160 ATP8B2P98198 1209 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 NFIAQ12857 509 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 TRIM32Q13049 653 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 LRRC26Q2I0M4 334 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 PROCA1Q8NCQ7 364 aaPredicted RBP13.91□□□□□ -0.18
CLN3-226ENST00000567160 PUS3Q9BZE2 481 aaKnown RBP13.91□□□□□ -0.18
CLN3-226ENST00000567160 PRKAG2Q9UGJ0 569 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 DAGLAQ9Y4D2 1042 aa13.91□□□□□ -0.18
CLN3-226ENST00000567160 TNFRSF10AO00220 468 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 MAP3K21Q5TCX8 1036 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 ZSCAN29Q8IWY8 852 aaPredicted RBP13.9□□□□□ -0.18
CLN3-226ENST00000567160 SIRT2Q8IXJ6 389 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 RPAP2Q8IXW5 612 aaPredicted RBP13.9□□□□□ -0.18
CLN3-226ENST00000567160 TRIB2Q92519 343 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 SEMA6BQ9H3T3 888 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 USP40Q9NVE5 1235 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 FAM198AQ9UFP1 575 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 GJD2Q9UKL4 321 aa13.9□□□□□ -0.18
CLN3-226ENST00000567160 ATRNL1Q5VV63 1379 aa13.89□□□□□ -0.19
CLN3-226ENST00000567160 PDE8BO95263 885 aa13.89□□□□□ -0.19
CLN3-226ENST00000567160 IFIT1P09914 478 aaKnown RBP13.89□□□□□ -0.19
CLN3-226ENST00000567160 FOSL2P15408 326 aa13.89□□□□□ -0.19
CLN3-226ENST00000567160 MTX1Q13505 466 aa13.89□□□□□ -0.19
CLN3-226ENST00000567160 SOCS4Q8WXH5 440 aa13.89□□□□□ -0.19
CLN3-226ENST00000567160 LOC285556D6RIA3 1793 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 MAST2Q6P0Q8 1798 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 PLXNB2O15031 1838 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 HMMRO75330 724 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 ENTPD3O75355 529 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 XRCC5P13010 732 aaKnown RBP13.88□□□□□ -0.19
CLN3-226ENST00000567160 ZKSCAN1P17029 563 aaPredicted RBP13.88□□□□□ -0.19
CLN3-226ENST00000567160 CYP2B6P20813 491 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 PLA2G5P39877 138 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 TJAP1Q5JTD0 557 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 TREML2Q5T2D2 321 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 KLHDC4Q8TBB5 520 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 FAM122AQ96E09 287 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 NUDT12Q9BQG2 462 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 MUC3AQ02505 3323 aa13.88□□□□□ -0.19
CLN3-226ENST00000567160 RFX5P48382 616 aaPredicted RBP13.87□□□□□ -0.19
CLN3-226ENST00000567160 MAP3K10Q02779 954 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 POLA2Q14181 598 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 PUM3Q15397 648 aaKnown RBP13.87□□□□□ -0.19
CLN3-226ENST00000567160 DIXDC1Q155Q3 683 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 ERICH6BQ5W0A0 696 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 SSH3Q8TE77 659 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 MYLIPQ8WY64 445 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 TBC1D2Q9BYX2 928 aa13.87□□□□□ -0.19
CLN3-226ENST00000567160 PA2G4Q9UQ80 394 aaKnown RBP13.87□□□□□ -0.19
CLN3-226ENST00000567160 LDHBP07195 334 aaKnown RBP13.86□□□□□ -0.19
CLN3-226ENST00000567160 RGS3P49796 1198 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 SMAD3P84022 425 aaKnown RBP13.86□□□□□ -0.19
CLN3-226ENST00000567160 ZFPM1Q8IX07 1006 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 VGLL2Q8N8G2 317 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 IDI2Q9BXS1 227 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 SIL1Q9H173 461 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 GTF3C3Q9Y5Q9 886 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 CDH23Q9H251 3354 aa13.86□□□□□ -0.19
CLN3-226ENST00000567160 LTBP2Q14767 1821 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 FRMPD3Q5JV73 1810 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 DNAH12Q6ZR08 3092 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 CACNB2Q08289 660 aaPredicted RBP13.85□□□□□ -0.19
CLN3-226ENST00000567160 LRRC24Q50LG9 513 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 LHX8Q68G74 356 aa13.85□□□□□ -0.19
CLN3-226ENST00000567160 CCAR1Q8IX12 1150 aaKnown RBP13.85□□□□□ -0.19
CLN3-226ENST00000567160 SENP6Q9GZR1 1112 aaPredicted RBP13.85□□□□□ -0.19
CLN3-226ENST00000567160 ASCC2Q9H1I8 757 aaPredicted RBP13.85□□□□□ -0.19
CLN3-226ENST00000567160 RWDD1Q9H446 243 aaPredicted RBP13.85□□□□□ -0.19
CLN3-226ENST00000567160 PPP4R2Q9NY27 417 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms