RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 LACTBP83111 547 aaPredicted RBP13.24□□□□□ -0.29
VPS39-208ENST00000564994 PRRT2Q7Z6L0 340 aaPredicted RBP13.24□□□□□ -0.29
VPS39-208ENST00000564994 RPAP2Q8IXW5 612 aaPredicted RBP13.24□□□□□ -0.29
VPS39-208ENST00000564994 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS39-208ENST00000564994 CPA4Q9UI42 421 aa13.24□□□□□ -0.29
VPS39-208ENST00000564994 APBB1O00213 710 aa13.23□□□□□ -0.29
VPS39-208ENST00000564994 BAG3O95817 575 aa13.23□□□□□ -0.29
VPS39-208ENST00000564994 DYNLL1P63167 89 aaKnown RBP13.23□□□□□ -0.29
VPS39-208ENST00000564994 MAPKAPK5Q8IW41 473 aa13.23□□□□□ -0.29
VPS39-208ENST00000564994 TGFBRAP1Q8WUH2 860 aa13.23□□□□□ -0.29
VPS39-208ENST00000564994 NOL10Q9BSC4 688 aaKnown RBP13.23□□□□□ -0.29
VPS39-208ENST00000564994 LOC285556D6RIA3 1793 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 FLT1P17948 1338 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 TRIM75PA6NK02 468 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 IGSF3O75054 1194 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 IDH1O75874 414 aaKnown RBP13.22□□□□□ -0.29
VPS39-208ENST00000564994 ECM2O94769 699 aaPredicted RBP13.22□□□□□ -0.29
VPS39-208ENST00000564994 CYP2C8P10632 490 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 PLCG2P16885 1265 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 CYP7A1P22680 504 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 HSP90AB4PQ58FF6 505 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 ARMC5Q96C12 935 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 PTCH2Q9Y6C5 1203 aa13.22□□□□□ -0.29
VPS39-208ENST00000564994 POTEFA5A3E0 1075 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 CAP2P40123 477 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 GADL1Q6ZQY3 521 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 FASTKD5Q7L8L6 764 aaKnown RBP13.21□□□□□ -0.29
VPS39-208ENST00000564994 MAGEB6Q8N7X4 407 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 MIGA1Q8NAN2 632 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 KIF1BPQ96EK5 621 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 DNAJC18Q9H819 358 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 PI4KBQ9UBF8 816 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 HERC5Q9UII4 1024 aaKnown RBP13.21□□□□□ -0.29
VPS39-208ENST00000564994 PALD1Q9ULE6 856 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 DOCK3Q8IZD9 2030 aa13.21□□□□□ -0.29
VPS39-208ENST00000564994 HMMRO75330 724 aa13.2□□□□□ -0.3
VPS39-208ENST00000564994 BCRP11274 1271 aa13.2□□□□□ -0.3
VPS39-208ENST00000564994 JAG1P78504 1218 aa13.2□□□□□ -0.3
VPS39-208ENST00000564994 PDE3AQ14432 1141 aa13.2□□□□□ -0.3
VPS39-208ENST00000564994 ARHGEF6Q15052 776 aa13.2□□□□□ -0.3
VPS39-208ENST00000564994 METTL16Q86W50 562 aaKnown RBP13.2□□□□□ -0.3
VPS39-208ENST00000564994 CLASRPQ8N2M8 674 aaKnown RBP13.2□□□□□ -0.3
VPS39-208ENST00000564994 PARK7Q99497 189 aaKnown RBP13.2□□□□□ -0.3
VPS39-208ENST00000564994 DHX36Q9H2U1 1008 aaKnown RBP13.2□□□□□ -0.3
VPS39-208ENST00000564994 SAP30BPQ9UHR5 308 aaKnown RBP13.2□□□□□ -0.3
VPS39-208ENST00000564994 DDX60LQ5H9U9 1706 aaKnown RBP13.19□□□□□ -0.3
VPS39-208ENST00000564994 RAB11FIP3O75154 756 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 PSMC4P43686 418 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 MAP3K12Q12852 859 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 SPP2Q13103 211 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 KIF22Q14807 665 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 SHROOM1Q2M3G4 852 aaPredicted RBP13.19□□□□□ -0.3
VPS39-208ENST00000564994 TREML2Q5T2D2 321 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 ZNF333Q96JL9 665 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 TRIM47Q96LD4 638 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 BCL11AQ9H165 835 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 SLC45A1Q9Y2W3 748 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 MYH7P12883 1935 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 NAV1Q8NEY1 1877 aa13.19□□□□□ -0.3
VPS39-208ENST00000564994 SLC4A8Q2Y0W8 1093 aa13.18□□□□□ -0.3
VPS39-208ENST00000564994 SLC9C1Q4G0N8 1177 aa13.18□□□□□ -0.3
VPS39-208ENST00000564994 FOXP4Q8IVH2 680 aaPredicted RBP13.18□□□□□ -0.3
VPS39-208ENST00000564994 ZNF280CQ8ND82 737 aa13.18□□□□□ -0.3
VPS39-208ENST00000564994 SH3TC2Q8TF17 1288 aa13.18□□□□□ -0.3
VPS39-208ENST00000564994 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS39-208ENST00000564994 EDC3Q96F86 508 aaKnown RBP13.18□□□□□ -0.3
VPS39-208ENST00000564994 CHMP4BQ9H444 224 aaKnown RBP13.18□□□□□ -0.3
VPS39-208ENST00000564994 AGTPBP1Q9UPW5 1226 aa13.18□□□□□ -0.3
VPS39-208ENST00000564994 USP17L5A8MUK1 530 aa13.17□□□□□ -0.3
VPS39-208ENST00000564994 GNRH1P01148 92 aa13.17□□□□□ -0.3
VPS39-208ENST00000564994 IFIT2P09913 472 aaKnown RBP13.17□□□□□ -0.3
VPS39-208ENST00000564994 OSBPP22059 807 aa13.17□□□□□ -0.3
VPS39-208ENST00000564994 RIOK1Q9BRS2 568 aaKnown RBP13.17□□□□□ -0.3
VPS39-208ENST00000564994 SRRDQ9UH36 339 aa13.17□□□□□ -0.3
VPS39-208ENST00000564994 TCRBV5S4A2TA0A5A2 114 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 GOLIM4O00461 696 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 GDF11O95390 407 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 FMNL1O95466 1100 aaPredicted RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 PDE6AP16499 860 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 EN2P19622 333 aaPredicted RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 USP5P45974 858 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 HMGCS2P54868 508 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 PRMT2P55345 433 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 TTF1Q15361 905 aaPredicted RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 SH3D19Q5HYK7 790 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 SLC9C2Q5TAH2 1124 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 TMED8Q6PL24 325 aaPredicted RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 CRACR2BQ8N4Y2 399 aaPredicted RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 PROCA1Q8NCQ7 364 aaPredicted RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 DNAJC2Q99543 621 aaKnown RBP13.16□□□□□ -0.3
VPS39-208ENST00000564994 WDR18Q9BV38 432 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 TBC1D2Q9BYX2 928 aa13.16□□□□□ -0.3
VPS39-208ENST00000564994 BAZ2AQ9UIF9 1905 aaKnown RBP13.15□□□□□ -0.3
VPS39-208ENST00000564994 SMARCA5O60264 1052 aaPredicted RBP13.15□□□□□ -0.3
VPS39-208ENST00000564994 MYCP01106 439 aaPredicted RBP13.15□□□□□ -0.3
VPS39-208ENST00000564994 HLA-DOAP06340 250 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 ASNSP08243 561 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 SLFNL1Q499Z3 407 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 NBPF11Q86T75 865 aa13.15□□□□□ -0.3
VPS39-208ENST00000564994 CERS3Q8IU89 383 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms