RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 TTC41PQ6P2S7 1318 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 PHF20L1A8MW92 1017 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 CETPP11597 493 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 DYNLL1P63167 89 aaKnown RBP16.2■□□□□ 0.18
CLK3-216ENST00000564468 SNAPC2Q13487 334 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 NOM1Q5C9Z4 860 aaKnown RBP16.2■□□□□ 0.18
CLK3-216ENST00000564468 ANKRD45Q5TZF3 282 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 FOXP4Q8IVH2 680 aaPredicted RBP16.2■□□□□ 0.18
CLK3-216ENST00000564468 SCYL3Q8IZE3 742 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 MS4A4AQ96JQ5 239 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 TRIM34Q9BYJ4 488 aa16.2■□□□□ 0.18
CLK3-216ENST00000564468 ZNF532Q9HCE3 1301 aa16.19■□□□□ 0.18
CLK3-216ENST00000564468 CCL15-CCL14A0A0B4J2E2 113 aa16.19■□□□□ 0.18
CLK3-216ENST00000564468 ADD2P35612 726 aa16.19■□□□□ 0.18
CLK3-216ENST00000564468 CCL15Q16663 113 aa16.19■□□□□ 0.18
CLK3-216ENST00000564468 LRRFIP1Q32MZ4 808 aaKnown RBP16.19■□□□□ 0.18
CLK3-216ENST00000564468 CNKSR2Q8WXI2 1034 aa16.19■□□□□ 0.18
CLK3-216ENST00000564468 EDC3Q96F86 508 aaKnown RBP16.19■□□□□ 0.18
CLK3-216ENST00000564468 CRNKL1Q9BZJ0 848 aaKnown RBP16.19■□□□□ 0.18
CLK3-216ENST00000564468 NAV1Q8NEY1 1877 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 PTPRFP10586 1907 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 SIPA1L1O43166 1804 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 PHIPQ8WWQ0 1821 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 IRF6O14896 467 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 TBC1D8O95759 1140 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 UBE3CQ15386 1083 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 TTC6Q86TZ1 520 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 CRACR2BQ8N4Y2 399 aaPredicted RBP16.18■□□□□ 0.18
CLK3-216ENST00000564468 EXOC6Q8TAG9 804 aa16.18■□□□□ 0.18
CLK3-216ENST00000564468 ZCCHC17Q9NP64 241 aaKnown RBP16.18■□□□□ 0.18
CLK3-216ENST00000564468 TCRBV5S4A2TA0A5A2 114 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 IGF2BP3O00425 579 aaKnown RBP eCLIP16.17■□□□□ 0.18
CLK3-216ENST00000564468 CXCL11O14625 94 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 GLRX3O76003 335 aaKnown RBP16.17■□□□□ 0.18
CLK3-216ENST00000564468 BRI3BPQ8WY22 251 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 RIOK1Q9BRS2 568 aaKnown RBP16.17■□□□□ 0.18
CLK3-216ENST00000564468 TBC1D2Q9BYX2 928 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 PALD1Q9ULE6 856 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 KCNH4Q9UQ05 1017 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 MYH8P13535 1937 aa16.17■□□□□ 0.18
CLK3-216ENST00000564468 BAZ2AQ9UIF9 1905 aaKnown RBP16.16■□□□□ 0.18
CLK3-216ENST00000564468 GPR25O00155 361 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 PTPRAP18433 802 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 MX1P20591 662 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 METTL16Q86W50 562 aaKnown RBP16.16■□□□□ 0.18
CLK3-216ENST00000564468 KBTBD3Q8NAB2 608 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 ZNF296Q8WUU4 475 aaPredicted RBP16.16■□□□□ 0.18
CLK3-216ENST00000564468 PTPN18Q99952 460 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 GINM1Q9NU53 330 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 ZHX2Q9Y6X8 837 aa16.16■□□□□ 0.18
CLK3-216ENST00000564468 FKTNO75072 461 aa16.15■□□□□ 0.18
CLK3-216ENST00000564468 ZFYP08048 801 aaPredicted RBP16.15■□□□□ 0.18
CLK3-216ENST00000564468 CAP2P40123 477 aa16.15■□□□□ 0.18
CLK3-216ENST00000564468 FBXO46Q6PJ61 603 aaPredicted RBP16.15■□□□□ 0.18
CLK3-216ENST00000564468 DDRGK1Q96HY6 314 aa16.15■□□□□ 0.18
CLK3-216ENST00000564468 ZFYVE28Q9HCC9 887 aa16.15■□□□□ 0.18
CLK3-216ENST00000564468 SAP30BPQ9UHR5 308 aaKnown RBP16.15■□□□□ 0.18
CLK3-216ENST00000564468 FAM196BA6NMK8 535 aa16.14■□□□□ 0.17
CLK3-216ENST00000564468 POLR3DP05423 398 aaPredicted RBP16.14■□□□□ 0.17
CLK3-216ENST00000564468 TAF1CQ15572 869 aaPredicted RBP16.14■□□□□ 0.17
CLK3-216ENST00000564468 FASTKD5Q7L8L6 764 aaKnown RBP16.14■□□□□ 0.17
CLK3-216ENST00000564468 SMC5Q8IY18 1101 aa16.14■□□□□ 0.17
CLK3-216ENST00000564468 EHD4Q9H223 541 aa16.14■□□□□ 0.17
CLK3-216ENST00000564468 MBD4O95243 580 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 ASNSP08243 561 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 CRHR2Q13324 411 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 TSHZ3Q63HK5 1081 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 ANKRD23Q86SG2 305 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 AMOTL1Q8IY63 956 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 LCORLQ8N3X6 602 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 AS3MTQ9HBK9 375 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 ATP8A2Q9NTI2 1148 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 SERPINB13Q9UIV8 391 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 TAOK2Q9UL54 1235 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 AFG3L2Q9Y4W6 797 aa16.13■□□□□ 0.17
CLK3-216ENST00000564468 DDX60LQ5H9U9 1706 aaKnown RBP16.13■□□□□ 0.17
CLK3-216ENST00000564468 USP17L5A8MUK1 530 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 BTBD19C9JJ37 291 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 SLURP2P0DP57 97 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 FAM43AQ8N2R8 423 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 PI4K2BQ8TCG2 481 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 ARMT1Q9H993 441 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 MCM9Q9NXL9 1143 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 STAP2Q9UGK3 403 aa16.12■□□□□ 0.17
CLK3-216ENST00000564468 A0A0G2JLL6 359 aaPredicted RBP16.11■□□□□ 0.17
CLK3-216ENST00000564468 RNF113AO15541 343 aaKnown RBP16.11■□□□□ 0.17
CLK3-216ENST00000564468 PRRT2Q7Z6L0 340 aaPredicted RBP16.11■□□□□ 0.17
CLK3-216ENST00000564468 ZNF280CQ8ND82 737 aa16.11■□□□□ 0.17
CLK3-216ENST00000564468 OTUD7AQ8TE49 926 aaPredicted RBP16.11■□□□□ 0.17
CLK3-216ENST00000564468 SDR42E1Q8WUS8 393 aa16.11■□□□□ 0.17
CLK3-216ENST00000564468 APPBP2Q92624 585 aa16.11■□□□□ 0.17
CLK3-216ENST00000564468 ERO1AQ96HE7 468 aa16.11■□□□□ 0.17
CLK3-216ENST00000564468 DCP1AQ9NPI6 582 aaPredicted RBP16.11■□□□□ 0.17
CLK3-216ENST00000564468 SALL3Q9BXA9 1300 aa16.11■□□□□ 0.17
CLK3-216ENST00000564468 IGHDP01880 384 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 PDE1AP54750 535 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 SP3Q02447 781 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 ARHGEF6Q15052 776 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 SLC4A8Q2Y0W8 1093 aa16.1■□□□□ 0.17
CLK3-216ENST00000564468 FSD1Q9BTV5 496 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms