RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MED15Q96RN5 788 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 EPB41L4AQ9HCS5 686 aaPredicted RBP15.13■□□□□ 0.01
CLN3-210ENST00000563874 PCDHB6Q9Y5E3 794 aa15.13■□□□□ 0.01
CLN3-210ENST00000563874 LAMB4A4D0S4 1761 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 SASH3O75995 380 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 SPECC1LQ69YQ0 1117 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 STRBPQ96SI9 672 aaKnown RBP15.12■□□□□ 0.01
CLN3-210ENST00000563874 SRRTQ9BXP5 876 aaKnown RBP15.12■□□□□ 0.01
CLN3-210ENST00000563874 PRDM11Q9NQV5 511 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 FBXO3Q9UK99 471 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 CCDC66A2RUB6 948 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 TBX2Q13207 712 aaPredicted RBP15.12■□□□□ 0.01
CLN3-210ENST00000563874 TAF3Q5VWG9 929 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 NAPBQ9H115 298 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 ARMT1Q9H993 441 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 TBC1D2BQ9UPU7 963 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 COL18A1P39060 1754 aa15.12■□□□□ 0.01
CLN3-210ENST00000563874 PRKAB2O43741 272 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 MBD4O95243 580 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 PPP2R3AQ06190 1150 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 KLHL10Q6JEL2 608 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 CPLX3Q8WVH0 158 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 SMARCE1Q969G3 411 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 CASP1P29466 404 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 UBE3CQ15386 1083 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 SAFBQ15424 915 aaKnown RBP eCLIP15.11■□□□□ 0.01
CLN3-210ENST00000563874 IFNL3Q8IZI9 196 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 MAGEB6Q8N7X4 407 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 OXER1Q8TDS5 423 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 DHX58Q96C10 678 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 TRERF1Q96PN7 1200 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 MPHOSPH8Q99549 860 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 FBXO2Q9UK22 296 aaPredicted RBP15.11■□□□□ 0.01
CLN3-210ENST00000563874 ASAP1Q9ULH1 1129 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 KCPQ6ZWJ8 1503 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 A0A0U1RQJ8 604 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 MMP1P03956 469 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 STX17P56962 302 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 TTF1Q15361 905 aaPredicted RBP15.11■□□□□ 0.01
CLN3-210ENST00000563874 SGMS1Q86VZ5 419 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 FCHSD1Q86WN1 690 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 NUP133Q8WUM0 1156 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 ATRIPQ8WXE1 791 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 MRPL44Q9H9J2 332 aaKnown RBP15.11■□□□□ 0.01
CLN3-210ENST00000563874 LZTFL1Q9NQ48 299 aa15.11■□□□□ 0.01
CLN3-210ENST00000563874 ANKRD18BA2A2Z9 1011 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 SOWAHDA6NJG2 315 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 FMNL1O95466 1100 aaPredicted RBP15.1■□□□□ 0.01
CLN3-210ENST00000563874 TBC1D8O95759 1140 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 ZNF18P17022 549 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 MAP3K9P80192 1104 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 TEX2Q8IWB9 1127 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 STRN4Q9NRL3 753 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 HOOK1Q9UJC3 728 aaKnown RBP15.1■□□□□ 0.01
CLN3-210ENST00000563874 TCRBV5S4A2TA0A5A2 114 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 TEX33O43247 280 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 STX10O60499 249 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 CYP2C19P33261 490 aa15.1■□□□□ 0.01
CLN3-210ENST00000563874 CCDC12Q8WUD4 166 aaPredicted RBP15.1■□□□□ 0.01
CLN3-210ENST00000563874 PDE8BO95263 885 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 PTPREP23469 700 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 AFMP43652 599 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 CC2D1AQ6P1N0 951 aaPredicted RBP15.09■□□□□ 0.01
CLN3-210ENST00000563874 NEK11Q8NG66 645 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 TEX13AQ9BXU3 409 aaPredicted RBP15.09■□□□□ 0.01
CLN3-210ENST00000563874 RAI14Q9P0K7 980 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 BCCIPQ9P287 314 aaKnown RBP eCLIP15.09■□□□□ 0.01
CLN3-210ENST00000563874 MRFAP1Q9Y605 127 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 MST1RQ04912 1400 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 PKD1L3Q7Z443 1732 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 FAM205CA6NFA0 338 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 COBLO75128 1261 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 CTSWP56202 376 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 TRIM28Q13263 835 aaKnown RBP15.09■□□□□ 0.01
CLN3-210ENST00000563874 MORC3Q14149 939 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 VGLL2Q8N8G2 317 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 KIFC2Q96AC6 838 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 PLA2G12BQ9BX93 195 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 PARD6BQ9BYG5 372 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 CSRNP2Q9H175 543 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 CABP5Q9NP86 173 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 ABCC12Q96J65 1359 aa15.09■□□□□ 0.01
CLN3-210ENST00000563874 hCG_1642624A0A1W2PR95 340 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 IRS4O14654 1257 aaPredicted RBP15.08■□□□□ 0.01
CLN3-210ENST00000563874 IFNAR1P17181 557 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 RTN1Q16799 776 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 NLRP10Q86W26 655 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 TRIM22Q8IYM9 498 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 CNPY4Q8N129 248 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 MLKLQ8NB16 471 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 TMOD3Q9NYL9 352 aa15.08■□□□□ 0.01
CLN3-210ENST00000563874 TRMT112Q9UI30 125 aaKnown RBP15.08■□□□□ 0.01
CLN3-210ENST00000563874 MYO5AQ9Y4I1 1855 aaKnown RBP15.08■□□□□ 0
CLN3-210ENST00000563874 LIFRP42702 1097 aa15.08■□□□□ 0
CLN3-210ENST00000563874 GYS2P54840 703 aa15.08■□□□□ 0
CLN3-210ENST00000563874 ST5P78524 1137 aa15.08■□□□□ 0
CLN3-210ENST00000563874 MFSD6Q6ZSS7 791 aa15.08■□□□□ 0
CLN3-210ENST00000563874 SMYD4Q8IYR2 804 aaPredicted RBP15.08■□□□□ 0
CLN3-210ENST00000563874 ENOX1Q8TC92 643 aaKnown RBP15.08■□□□□ 0
CLN3-210ENST00000563874 WDR17Q8IZU2 1322 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms