RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 GUCD1Q96NT3 240 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 OGDHLQ9ULD0 1010 aa13.02□□□□□ -0.33
SF3B3-204ENST00000563739 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.02□□□□□ -0.33
SF3B3-204ENST00000563739 MYO5AQ9Y4I1 1855 aaKnown RBP13.02□□□□□ -0.33
SF3B3-204ENST00000563739 HMGCRP04035 888 aa13.01□□□□□ -0.33
SF3B3-204ENST00000563739 ZEB1P37275 1124 aaPredicted RBP13.01□□□□□ -0.33
SF3B3-204ENST00000563739 JAG1P78504 1218 aa13.01□□□□□ -0.33
SF3B3-204ENST00000563739 NECAB2Q7Z6G3 386 aa13.01□□□□□ -0.33
SF3B3-204ENST00000563739 TTC28Q96AY4 2481 aa13□□□□□ -0.33
SF3B3-204ENST00000563739 RLFQ13129 1914 aa13□□□□□ -0.33
SF3B3-204ENST00000563739 LDHBP07195 334 aaKnown RBP13□□□□□ -0.33
SF3B3-204ENST00000563739 SLC5A1P13866 664 aa13□□□□□ -0.33
SF3B3-204ENST00000563739 RASGRF1Q13972 1273 aa13□□□□□ -0.33
SF3B3-204ENST00000563739 SHROOM1Q2M3G4 852 aaPredicted RBP13□□□□□ -0.33
SF3B3-204ENST00000563739 TDHQ8IZJ6 230 aa13□□□□□ -0.33
SF3B3-204ENST00000563739 RPTORQ8N122 1335 aa12.99□□□□□ -0.33
SF3B3-204ENST00000563739 CTNND1O60716 968 aaKnown RBP12.99□□□□□ -0.33
SF3B3-204ENST00000563739 CAPN2P17655 700 aa12.99□□□□□ -0.33
SF3B3-204ENST00000563739 ATP2B3Q16720 1220 aa12.99□□□□□ -0.33
SF3B3-204ENST00000563739 FAM163AQ96GL9 167 aaPredicted RBP12.99□□□□□ -0.33
SF3B3-204ENST00000563739 TXNRD2Q9NNW7 524 aa12.99□□□□□ -0.33
SF3B3-204ENST00000563739 MORF4L1Q9UBU8 362 aa12.99□□□□□ -0.33
SF3B3-204ENST00000563739 TAOK2Q9UL54 1235 aa12.99□□□□□ -0.33
SF3B3-204ENST00000563739 MROH7-TTC4A0A0A0MT08 1334 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 BTDP43251 543 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 LRRC26Q2I0M4 334 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 LHX8Q68G74 356 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 PROCA1Q8NCQ7 364 aaPredicted RBP12.98□□□□□ -0.33
SF3B3-204ENST00000563739 SMCR8Q8TEV9 937 aaPredicted RBP12.98□□□□□ -0.33
SF3B3-204ENST00000563739 USP6NLQ92738 828 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 NBPF3Q9H094 633 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 ASCC2Q9H1I8 757 aaPredicted RBP12.98□□□□□ -0.33
SF3B3-204ENST00000563739 C11orf49Q9H6J7 331 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 DNAJC18Q9H819 358 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 PICK1Q9NRD5 415 aa12.98□□□□□ -0.33
SF3B3-204ENST00000563739 PDS5AQ29RF7 1337 aaKnown RBP12.97□□□□□ -0.33
SF3B3-204ENST00000563739 POTEB2H3BUK9 544 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 TBC1D12O60347 775 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 HMGCS2P54868 508 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 SH3D19Q5HYK7 790 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 CCDC102BQ68D86 513 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 COA7Q96BR5 231 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 SIL1Q9H173 461 aa12.97□□□□□ -0.33
SF3B3-204ENST00000563739 PA2G4Q9UQ80 394 aaKnown RBP12.97□□□□□ -0.33
SF3B3-204ENST00000563739 CIAO1O76071 339 aa12.96□□□□□ -0.33
SF3B3-204ENST00000563739 SPP2Q13103 211 aa12.96□□□□□ -0.33
SF3B3-204ENST00000563739 PICALMQ13492 652 aa12.96□□□□□ -0.33
SF3B3-204ENST00000563739 PI16Q6UXB8 463 aa12.96□□□□□ -0.33
SF3B3-204ENST00000563739 SSH1Q8WYL5 1049 aa12.96□□□□□ -0.33
SF3B3-204ENST00000563739 LRRFIP2Q9Y608 721 aaKnown RBP12.96□□□□□ -0.33
SF3B3-204ENST00000563739 PTPRCP08575 1304 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 GPR75-ASB3A0A0A6YYF3 556 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 SEMA3EO15041 775 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 PRKAR2AP13861 404 aaKnown RBP12.95□□□□□ -0.34
SF3B3-204ENST00000563739 CCND3P30281 292 aaPredicted RBP12.95□□□□□ -0.34
SF3B3-204ENST00000563739 CCL14Q16627 93 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.95□□□□□ -0.34
SF3B3-204ENST00000563739 HMX1Q9NP08 348 aaPredicted RBP12.95□□□□□ -0.34
SF3B3-204ENST00000563739 DENND2AQ9ULE3 1009 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 A0A0G2JMZ2 1700 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 ZNF236Q9UL36 1845 aa12.95□□□□□ -0.34
SF3B3-204ENST00000563739 IGHA2P01877 340 aa12.94□□□□□ -0.34
SF3B3-204ENST00000563739 GCLCP48506 637 aaPredicted RBP12.94□□□□□ -0.34
SF3B3-204ENST00000563739 MECOMQ03112 1051 aa12.94□□□□□ -0.34
SF3B3-204ENST00000563739 CACNB2Q08289 660 aaPredicted RBP12.94□□□□□ -0.34
SF3B3-204ENST00000563739 ZNF280CQ8ND82 737 aa12.94□□□□□ -0.34
SF3B3-204ENST00000563739 UBE2OQ9C0C9 1292 aaKnown RBP12.94□□□□□ -0.34
SF3B3-204ENST00000563739 OSBPL5Q9H0X9 879 aaPredicted RBP12.94□□□□□ -0.34
SF3B3-204ENST00000563739 PORCNQ9H237 461 aa12.94□□□□□ -0.34
SF3B3-204ENST00000563739 MRS2Q9HD23 443 aa12.94□□□□□ -0.34
SF3B3-204ENST00000563739 CYP2B6P20813 491 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 CAP2P40123 477 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 MDM2Q00987 491 aaPredicted RBP12.93□□□□□ -0.34
SF3B3-204ENST00000563739 Q3C1V9 767 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 MORN1Q5T089 497 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 FAM109BQ6ICB4 259 aaPredicted RBP12.93□□□□□ -0.34
SF3B3-204ENST00000563739 ZSCAN29Q8IWY8 852 aaPredicted RBP12.93□□□□□ -0.34
SF3B3-204ENST00000563739 P2RX7Q99572 595 aaKnown RBP12.93□□□□□ -0.34
SF3B3-204ENST00000563739 PRDM6Q9NQX0 595 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 RBPJLQ9UBG7 517 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 FBXO3Q9UK99 471 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 PNMA3Q9UL41 463 aa12.93□□□□□ -0.34
SF3B3-204ENST00000563739 CNMDO75829 334 aa12.92□□□□□ -0.34
SF3B3-204ENST00000563739 XRCC5P13010 732 aaKnown RBP12.92□□□□□ -0.34
SF3B3-204ENST00000563739 TIMM10P62072 90 aa12.92□□□□□ -0.34
SF3B3-204ENST00000563739 NSUN4Q96CB9 384 aaKnown RBP12.92□□□□□ -0.34
SF3B3-204ENST00000563739 COPRSQ9NQ92 184 aa12.92□□□□□ -0.34
SF3B3-204ENST00000563739 FLRT1Q9NZU1 646 aa12.92□□□□□ -0.34
SF3B3-204ENST00000563739 PARP14Q460N5 1801 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 HOXA7P31268 230 aaPredicted RBP12.91□□□□□ -0.34
SF3B3-204ENST00000563739 HERVK_113P62684 666 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 MTMR2Q13614 643 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 METTL16Q86W50 562 aaKnown RBP12.91□□□□□ -0.34
SF3B3-204ENST00000563739 DZIP1Q86YF9 867 aaKnown RBP12.91□□□□□ -0.34
SF3B3-204ENST00000563739 WDR18Q9BV38 432 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.91□□□□□ -0.34
SF3B3-204ENST00000563739 HMG20BQ9P0W2 317 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 CEP126Q9P2H0 1117 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 ABCF2Q9UG63 623 aa12.91□□□□□ -0.34
SF3B3-204ENST00000563739 MYH1P12882 1939 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms