RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 DEF6Q9H4E7 631 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 INCENPQ9NQS7 918 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 FOXO4P98177 505 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 SCARF1Q14162 830 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 SKIDA1Q1XH10 827 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 RPGRQ92834 1020 aaKnown RBP11.88□□□□□ -0.51
RNF40-204ENST00000563683 BPIFA3Q9BQP9 254 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 RICTORQ6R327 1708 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 RILPL1Q5EBL4 403 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 NEK11Q8NG66 645 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 TTLL11Q8NHH1 800 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 VPS54Q9P1Q0 977 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 CACNA1FO60840 1977 aa11.88□□□□□ -0.51
RNF40-204ENST00000563683 C3P01024 1663 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 MROH5Q6ZUA9 1318 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 TSPY3P0CV98 308 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 TSPY8P0CW00 308 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 AATFQ9NY61 560 aaKnown RBP eCLIP11.87□□□□□ -0.51
RNF40-204ENST00000563683 PRKAB2O43741 272 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 KIF5CO60282 957 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 DEXIO95424 95 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 BAG3O95817 575 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 MCAMP43121 646 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 MAPK8IP2Q13387 824 aaPredicted RBP11.87□□□□□ -0.51
RNF40-204ENST00000563683 PARP10Q53GL7 1025 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 NOM1Q5C9Z4 860 aaKnown RBP11.87□□□□□ -0.51
RNF40-204ENST00000563683 ATG9AQ7Z3C6 839 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 HEATR3Q7Z4Q2 680 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 CCDC12Q8WUD4 166 aaPredicted RBP11.87□□□□□ -0.51
RNF40-204ENST00000563683 ZNF287Q9HBT7 754 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 CRYBG1Q9Y4K1 1723 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 A0A0G2JLW4 131 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 IDEP14735 1019 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 KRT2P35908 639 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 ZSCAN26Q16670 478 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 PTPN21Q16825 1174 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 APOA5Q6Q788 366 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 TPTE2Q6XPS3 522 aa11.87□□□□□ -0.51
RNF40-204ENST00000563683 TRMT44Q8IYL2 757 aaKnown RBP11.87□□□□□ -0.51
RNF40-204ENST00000563683 SMARCC1Q92922 1105 aaPredicted RBP11.87□□□□□ -0.51
RNF40-204ENST00000563683 F8W031 263 aaPredicted RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 OAS2P29728 719 aaKnown RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 NLRP12P59046 1061 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 DPCR1Q3MIW9 517 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 NBPF11Q86T75 865 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 GPR161Q8N6U8 529 aaKnown RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 ARFGAP3Q9NP61 516 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 MAPK8IP1Q9UQF2 711 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 FAM208AQ9UK61 1670 aaKnown RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 IRX3P78415 501 aaPredicted RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 SMC1AQ14683 1233 aaKnown RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 KARSQ15046 597 aaKnown RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 ZNF827Q17R98 1081 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 RABL6Q3YEC7 729 aaPredicted RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 JAKMIP3Q5VZ66 844 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 KIAA1328Q86T90 577 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 GOLGA5Q8TBA6 731 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 ATG3Q9NT62 314 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 FBXO3Q9UK99 471 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 GOLGA6L9A6NEM1 432 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 ADD2P35612 726 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 ARMCX5Q6P1M9 558 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 LINC00301Q8NCQ3 95 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 PIH1D3Q9NQM4 214 aaKnown RBP11.86□□□□□ -0.51
RNF40-204ENST00000563683 TCP11L1Q9NUJ3 509 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 RTEL1Q9NZ71 1219 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 UBAP1LF5GYI3 381 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 TADA3O75528 432 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 UBE3CQ15386 1083 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 ENGASEQ8NFI3 743 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 GOLPH3LQ9H4A5 285 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 NFE2L3Q9Y4A8 694 aa11.86□□□□□ -0.51
RNF40-204ENST00000563683 USP17L12C9JPN9 530 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 USP17L21D6R901 530 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 GNPATO15228 680 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 CUTAO60888 179 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 EVCP57679 992 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 FAM47AQ5JRC9 791 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 FCHSD1Q86WN1 690 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 ZNF654Q8IZM8 581 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 EXOC4Q96A65 974 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 LZTFL1Q9NQ48 299 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 ZNF219Q9P2Y4 722 aaPredicted RBP11.85□□□□□ -0.51
RNF40-204ENST00000563683 N4BP2Q86UW6 1770 aaPredicted RBP11.85□□□□□ -0.51
RNF40-204ENST00000563683 STAT6P42226 847 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 SPTY2D1Q68D10 685 aaPredicted RBP11.85□□□□□ -0.51
RNF40-204ENST00000563683 PSD3Q9NYI0 1048 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 ZSWIM5Q9P217 1185 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 LDHCP07864 332 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 RFX5P48382 616 aaPredicted RBP11.85□□□□□ -0.51
RNF40-204ENST00000563683 FAM98CQ17RN3 349 aaKnown RBP11.85□□□□□ -0.51
RNF40-204ENST00000563683 LEKR1Q6ZMV7 388 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 PIK3AP1Q6ZUJ8 805 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 CARD6Q9BX69 1037 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 RSPH14Q9UHP6 348 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 RGPD1P0DJD0 1748 aa11.85□□□□□ -0.51
RNF40-204ENST00000563683 ZNF335Q9H4Z2 1342 aaPredicted RBP11.84□□□□□ -0.51
RNF40-204ENST00000563683 CMA1P23946 247 aa11.84□□□□□ -0.51
RNF40-204ENST00000563683 CHRNDQ07001 517 aa11.84□□□□□ -0.51
RNF40-204ENST00000563683 PPARAQ07869 468 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms