RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 MAP3K10Q02779 954 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 MAP3K11Q16584 847 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 LDLRAD1Q5T700 205 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 CTR9Q6PD62 1173 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.75□□□□□ -0.53
CLK3-208ENST00000562626 IFNL3Q8IZI9 196 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 CNKSR2Q8WXI2 1034 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 DYNLL2Q96FJ2 89 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 CREBZFQ9NS37 354 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 DIAPH3Q9NSV4 1193 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 MCM9Q9NXL9 1143 aa11.75□□□□□ -0.53
CLK3-208ENST00000562626 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.75□□□□□ -0.53
CLK3-208ENST00000562626 USP17L12C9JPN9 530 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 USP17L21D6R901 530 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 HSPD1P10809 573 aaKnown RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 HUNKP57058 714 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 PTH1RQ03431 593 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 TTLL12Q14166 644 aaPredicted RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 LRRFIP1Q32MZ4 808 aaKnown RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 SUPT20HL1Q3ZLR7 823 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 C12orf60Q5U649 245 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 CCDC84Q86UT8 332 aaPredicted RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 METTL16Q86W50 562 aaKnown RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 CERS3Q8IU89 383 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 C2orf69Q8N8R5 385 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.74□□□□□ -0.53
CLK3-208ENST00000562626 NKX2-3Q8TAU0 364 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 ZKSCAN4Q969J2 545 aaPredicted RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 ZIC5Q96T25 663 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 ATP8A2Q9NTI2 1148 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 ZNF112Q9UJU3 913 aa11.74□□□□□ -0.53
CLK3-208ENST00000562626 ABT1Q9ULW3 272 aaKnown RBP11.74□□□□□ -0.53
CLK3-208ENST00000562626 FAM155AB1AL88 458 aaPredicted RBP11.73□□□□□ -0.53
CLK3-208ENST00000562626 PATL2C9JE40 543 aaKnown RBP11.73□□□□□ -0.53
CLK3-208ENST00000562626 SGSM2O43147 1006 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 COL11A1P12107 1806 aaPredicted RBP11.73□□□□□ -0.53
CLK3-208ENST00000562626 SHMT1P34896 483 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 GJA5P36382 358 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 GABPAQ06546 454 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 RLFQ13129 1914 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 VGLL4Q14135 290 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 CYP4F22Q6NT55 531 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 TICAM2Q86XR7 235 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 STK11IPQ8N1F8 1099 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 WRNIP1Q96S55 665 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 NBPF3Q9H094 633 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 INCENPQ9NQS7 918 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 SNCAIPQ9Y6H5 919 aa11.73□□□□□ -0.53
CLK3-208ENST00000562626 ROBO3Q96MS0 1386 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 RASSF10A6NK89 507 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 HIP1O00291 1037 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 FGAP02671 866 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 APPP05067 770 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 POLR3DP05423 398 aaPredicted RBP11.72□□□□□ -0.53
CLK3-208ENST00000562626 NF2P35240 595 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 RASAL3Q86YV0 1011 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 ZNF341Q9BYN7 854 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 DHX36Q9H2U1 1008 aaKnown RBP11.72□□□□□ -0.53
CLK3-208ENST00000562626 ELP3Q9H9T3 547 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLK3-208ENST00000562626 PI4KBQ9UBF8 816 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 ZSWIM8A7E2V4 1837 aa11.72□□□□□ -0.53
CLK3-208ENST00000562626 RAD50Q92878 1312 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 MINDY4BA8MYZ0 360 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 PPP1R12BO60237 982 aaPredicted RBP11.71□□□□□ -0.53
CLK3-208ENST00000562626 TBC1D12O60347 775 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 AOC2O75106 756 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 CDC45O75419 566 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 GDF11O95390 407 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 GNAT2P19087 354 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 TDO2P48775 406 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 FKBP1BP68106 108 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 CTDSPL2Q05D32 466 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 MKRN3Q13064 507 aaKnown RBP11.71□□□□□ -0.53
CLK3-208ENST00000562626 SBK1Q52WX2 424 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 DCAF15Q66K64 600 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 GIMAP6Q6P9H5 292 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 ARMC9Q7Z3E5 817 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 EHD4Q9H223 541 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 SERPINB13Q9UIV8 391 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 TAF6LQ9Y6J9 622 aa11.71□□□□□ -0.53
CLK3-208ENST00000562626 HLA-DOAP06340 250 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 IREB2P48200 963 aaKnown RBP11.7□□□□□ -0.54
CLK3-208ENST00000562626 VEGFBP49765 207 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 HAND2P61296 217 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 MAP3K9P80192 1104 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 GRM1Q13255 1194 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 ALX1Q15699 326 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 DEFB115Q30KQ5 88 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 RGMBQ6NW40 437 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 TATDN1Q6P1N9 297 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 TTC6Q86TZ1 520 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 CLEC10AQ8IUN9 316 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 FOXP4Q8IVH2 680 aaPredicted RBP11.7□□□□□ -0.54
CLK3-208ENST00000562626 ANKRD13AQ8IZ07 590 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 CRACR2BQ8N4Y2 399 aaPredicted RBP11.7□□□□□ -0.54
CLK3-208ENST00000562626 LSG1Q9H089 658 aaKnown RBP11.7□□□□□ -0.54
CLK3-208ENST00000562626 NAPBQ9H115 298 aa11.7□□□□□ -0.54
CLK3-208ENST00000562626 ARPP21Q9UBL0 812 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms