RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 TGFBRAP1Q8WUH2 860 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 ARHGAP39Q9C0H5 1083 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 ANTXR1Q9H6X2 564 aa12.57□□□□□ -0.4
CLK3-205ENST00000561673 IGSF3O75054 1194 aa12.56□□□□□ -0.4
CLK3-205ENST00000561673 IDH1O75874 414 aaKnown RBP12.56□□□□□ -0.4
CLK3-205ENST00000561673 CYP7A1P22680 504 aa12.56□□□□□ -0.4
CLK3-205ENST00000561673 RRP1BQ14684 758 aaKnown RBP12.56□□□□□ -0.4
CLK3-205ENST00000561673 FASTKD5Q7L8L6 764 aaKnown RBP12.56□□□□□ -0.4
CLK3-205ENST00000561673 CCDC84Q86UT8 332 aaPredicted RBP12.56□□□□□ -0.4
CLK3-205ENST00000561673 PI4KBQ9UBF8 816 aa12.56□□□□□ -0.4
CLK3-205ENST00000561673 CPA4Q9UI42 421 aa12.56□□□□□ -0.4
CLK3-205ENST00000561673 COL2A1P02458 1487 aaPredicted RBP12.55□□□□□ -0.4
CLK3-205ENST00000561673 TRIM75PA6NK02 468 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 HMMRO75330 724 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 CYP2C8P10632 490 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 DYNLL1P63167 89 aaKnown RBP12.55□□□□□ -0.4
CLK3-205ENST00000561673 KIF22Q14807 665 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 GADL1Q6ZQY3 521 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 MAPKAPK5Q8IW41 473 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 MAGEB6Q8N7X4 407 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 KIF1BPQ96EK5 621 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 DHX36Q9H2U1 1008 aaKnown RBP12.55□□□□□ -0.4
CLK3-205ENST00000561673 CHMP4BQ9H444 224 aaKnown RBP12.55□□□□□ -0.4
CLK3-205ENST00000561673 FLT1P17948 1338 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 ADGRA2Q96PE1 1338 aa12.55□□□□□ -0.4
CLK3-205ENST00000561673 DOCK2Q92608 1830 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 RAB11FIP3O75154 756 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 ECM2O94769 699 aaPredicted RBP12.54□□□□□ -0.4
CLK3-205ENST00000561673 CTGFP29279 349 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 CAP2P40123 477 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 PDE3AQ14432 1141 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 METTL16Q86W50 562 aaKnown RBP12.54□□□□□ -0.4
CLK3-205ENST00000561673 CLASRPQ8N2M8 674 aaKnown RBP12.54□□□□□ -0.4
CLK3-205ENST00000561673 MIGA1Q8NAN2 632 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 ARMC5Q96C12 935 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 PARK7Q99497 189 aaKnown RBP12.54□□□□□ -0.4
CLK3-205ENST00000561673 BCL11AQ9H165 835 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 HERC5Q9UII4 1024 aaKnown RBP12.54□□□□□ -0.4
CLK3-205ENST00000561673 PALD1Q9ULE6 856 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 PTCH2Q9Y6C5 1203 aa12.54□□□□□ -0.4
CLK3-205ENST00000561673 IFIT2P09913 472 aaKnown RBP12.53□□□□□ -0.4
CLK3-205ENST00000561673 PSMC4P43686 418 aa12.53□□□□□ -0.4
CLK3-205ENST00000561673 MAP3K12Q12852 859 aa12.53□□□□□ -0.4
CLK3-205ENST00000561673 SPP2Q13103 211 aa12.53□□□□□ -0.4
CLK3-205ENST00000561673 FOXP4Q8IVH2 680 aaPredicted RBP12.53□□□□□ -0.4
CLK3-205ENST00000561673 TRIM47Q96LD4 638 aa12.53□□□□□ -0.4
CLK3-205ENST00000561673 SAP30BPQ9UHR5 308 aaKnown RBP12.53□□□□□ -0.4
CLK3-205ENST00000561673 SLC45A1Q9Y2W3 748 aa12.53□□□□□ -0.4
CLK3-205ENST00000561673 POTEFA5A3E0 1075 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 USP17L5A8MUK1 530 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 GNRH1P01148 92 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 BCRP11274 1271 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 JAG1P78504 1218 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 SLC9C1Q4G0N8 1177 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 TREML2Q5T2D2 321 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 NBPF11Q86T75 865 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 ZNF280CQ8ND82 737 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 ZNF333Q96JL9 665 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 DNAJC18Q9H819 358 aa12.52□□□□□ -0.41
CLK3-205ENST00000561673 FMNL1O95466 1100 aaPredicted RBP12.51□□□□□ -0.41
CLK3-205ENST00000561673 USP5P45974 858 aa12.51□□□□□ -0.41
CLK3-205ENST00000561673 TTF1Q15361 905 aaPredicted RBP12.51□□□□□ -0.41
CLK3-205ENST00000561673 SLC4A8Q2Y0W8 1093 aa12.51□□□□□ -0.41
CLK3-205ENST00000561673 TMED8Q6PL24 325 aaPredicted RBP12.51□□□□□ -0.41
CLK3-205ENST00000561673 CERS3Q8IU89 383 aa12.51□□□□□ -0.41
CLK3-205ENST00000561673 CRACR2BQ8N4Y2 399 aaPredicted RBP12.51□□□□□ -0.41
CLK3-205ENST00000561673 PROCA1Q8NCQ7 364 aaPredicted RBP12.51□□□□□ -0.41
CLK3-205ENST00000561673 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLK3-205ENST00000561673 TBC1D2Q9BYX2 928 aa12.51□□□□□ -0.41
CLK3-205ENST00000561673 SRRDQ9UH36 339 aa12.51□□□□□ -0.41
CLK3-205ENST00000561673 AGTPBP1Q9UPW5 1226 aa12.51□□□□□ -0.41
CLK3-205ENST00000561673 GOLIM4O00461 696 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 HLA-DOAP06340 250 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 EN2P19622 333 aaPredicted RBP12.5□□□□□ -0.41
CLK3-205ENST00000561673 OSBPP22059 807 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 HOXD10P28358 340 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 HMGCS2P54868 508 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 PRMT2P55345 433 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 SHROOM1Q2M3G4 852 aaPredicted RBP12.5□□□□□ -0.41
CLK3-205ENST00000561673 SLC9C2Q5TAH2 1124 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 SH3TC2Q8TF17 1288 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 EDC3Q96F86 508 aaKnown RBP12.5□□□□□ -0.41
CLK3-205ENST00000561673 DNAJC2Q99543 621 aaKnown RBP12.5□□□□□ -0.41
CLK3-205ENST00000561673 RIOK1Q9BRS2 568 aaKnown RBP12.5□□□□□ -0.41
CLK3-205ENST00000561673 WDR18Q9BV38 432 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 TRIM34Q9BYJ4 488 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 MAST2Q6P0Q8 1798 aa12.5□□□□□ -0.41
CLK3-205ENST00000561673 DOCK1Q14185 1865 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 MYO5AQ9Y4I1 1855 aaKnown RBP12.49□□□□□ -0.41
CLK3-205ENST00000561673 MAGEB6P1A0A0J9YX57 407 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 GDF11O95390 407 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 ASNSP08243 561 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 PDE6AP16499 860 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 MKRN4PQ13434 485 aaPredicted RBP12.49□□□□□ -0.41
CLK3-205ENST00000561673 SH3D19Q5HYK7 790 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 SMCR8Q8TEV9 937 aaPredicted RBP12.49□□□□□ -0.41
CLK3-205ENST00000561673 BOLA2Q9H3K6 86 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 AS3MTQ9HBK9 375 aa12.49□□□□□ -0.41
CLK3-205ENST00000561673 ZSWIM8A7E2V4 1837 aa12.48□□□□□ -0.41
CLK3-205ENST00000561673 PHIPQ8WWQ0 1821 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms