RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 ADGRA2Q96PE1 1338 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 PLCG2P16885 1265 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 CAP2P40123 477 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 SPP2Q13103 211 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 ERC1Q8IUD2 1116 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 ZNF333Q96JL9 665 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 PARK7Q99497 189 aaKnown RBP12.49□□□□□ -0.41
LDLR-214ENST00000560628 TMEM106CQ9BVX2 250 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 ANTXR1Q9H6X2 564 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 PI4KBQ9UBF8 816 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 SAP30BPQ9UHR5 308 aaKnown RBP12.49□□□□□ -0.41
LDLR-214ENST00000560628 RCAN3Q9UKA8 241 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 PALD1Q9ULE6 856 aa12.49□□□□□ -0.41
LDLR-214ENST00000560628 OSBPP22059 807 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 SLC4A8Q2Y0W8 1093 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 HSP90AB4PQ58FF6 505 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 SIRT2Q8IXJ6 389 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 MIGA1Q8NAN2 632 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 RHPN1Q8TCX5 695 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 ZBTB40Q9NUA8 1239 aa12.48□□□□□ -0.41
LDLR-214ENST00000560628 GNRH1P01148 92 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 BCRP11274 1271 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 HOXD10P28358 340 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 JAG1P78504 1218 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 TREML2Q5T2D2 321 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 RPAP2Q8IXW5 612 aaPredicted RBP12.47□□□□□ -0.41
LDLR-214ENST00000560628 MAGEB6Q8N7X4 407 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 ZNF280CQ8ND82 737 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 DHX36Q9H2U1 1008 aaKnown RBP12.47□□□□□ -0.41
LDLR-214ENST00000560628 SRRDQ9UH36 339 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 HERC5Q9UII4 1024 aaKnown RBP12.47□□□□□ -0.41
LDLR-214ENST00000560628 DDX19BQ9UMR2 479 aa12.47□□□□□ -0.41
LDLR-214ENST00000560628 DOCK2Q92608 1830 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 FLT1P17948 1338 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 USP17L5A8MUK1 530 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 HMGCS2P54868 508 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 PRMT2P55345 433 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 FCGRTP55899 365 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 SHROOM1Q2M3G4 852 aaPredicted RBP12.46□□□□□ -0.41
LDLR-214ENST00000560628 C20orf194Q5TEA3 1177 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 FOXP4Q8IVH2 680 aaPredicted RBP12.46□□□□□ -0.41
LDLR-214ENST00000560628 CRACR2BQ8N4Y2 399 aaPredicted RBP12.46□□□□□ -0.41
LDLR-214ENST00000560628 RAET1EQ8TD07 263 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 SMCR8Q8TEV9 937 aaPredicted RBP12.46□□□□□ -0.41
LDLR-214ENST00000560628 TRIM34Q9BYJ4 488 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 AGTPBP1Q9UPW5 1226 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 SLC45A1Q9Y2W3 748 aa12.46□□□□□ -0.41
LDLR-214ENST00000560628 ZSWIM8A7E2V4 1837 aa12.46□□□□□ -0.42
LDLR-214ENST00000560628 KIAA0100Q14667 2235 aaKnown RBP12.45□□□□□ -0.42
LDLR-214ENST00000560628 MYPNQ86TC9 1320 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 HMMRO75330 724 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 GDF11O95390 407 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 IFIT2P09913 472 aaKnown RBP12.45□□□□□ -0.42
LDLR-214ENST00000560628 USP5P45974 858 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 PRKCZQ05513 592 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 MAP3K12Q12852 859 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 PRPF38BQ5VTL8 546 aaKnown RBP12.45□□□□□ -0.42
LDLR-214ENST00000560628 CLASRPQ8N2M8 674 aaKnown RBP12.45□□□□□ -0.42
LDLR-214ENST00000560628 ANKRD13CQ8N6S4 541 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 KIF1BPQ96EK5 621 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 DNAJC18Q9H819 358 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 GABRQQ9UN88 632 aa12.45□□□□□ -0.42
LDLR-214ENST00000560628 COL2A1P02458 1487 aaPredicted RBP12.45□□□□□ -0.42
LDLR-214ENST00000560628 PDE4DIPQ5VU43 2346 aa12.44□□□□□ -0.42
LDLR-214ENST00000560628 IGSF3O75054 1194 aa12.44□□□□□ -0.42
LDLR-214ENST00000560628 HLA-DOAP06340 250 aa12.44□□□□□ -0.42
LDLR-214ENST00000560628 GRK4P32298 578 aa12.44□□□□□ -0.42
LDLR-214ENST00000560628 MTFR1Q15390 333 aa12.44□□□□□ -0.42
LDLR-214ENST00000560628 METTL16Q86W50 562 aaKnown RBP12.44□□□□□ -0.42
LDLR-214ENST00000560628 PROCA1Q8NCQ7 364 aaPredicted RBP12.44□□□□□ -0.42
LDLR-214ENST00000560628 DNAJC2Q99543 621 aaKnown RBP12.44□□□□□ -0.42
LDLR-214ENST00000560628 AS3MTQ9HBK9 375 aa12.44□□□□□ -0.42
LDLR-214ENST00000560628 BIN2Q9UBW5 565 aaPredicted RBP12.44□□□□□ -0.42
LDLR-214ENST00000560628 GOLIM4O00461 696 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 RAB11FIP3O75154 756 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 ASNSP08243 561 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 MTMR2Q13614 643 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 SLC9C2Q5TAH2 1124 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 EDC3Q96F86 508 aaKnown RBP12.43□□□□□ -0.42
LDLR-214ENST00000560628 WDR18Q9BV38 432 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 TBC1D2Q9BYX2 928 aa12.43□□□□□ -0.42
LDLR-214ENST00000560628 TNRC18O15417 2968 aaPredicted RBP12.42□□□□□ -0.42
LDLR-214ENST00000560628 MYO5AQ9Y4I1 1855 aaKnown RBP12.42□□□□□ -0.42
LDLR-214ENST00000560628 MAGEB6P1A0A0J9YX57 407 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 TNPO2O14787 897 aaKnown RBP12.42□□□□□ -0.42
LDLR-214ENST00000560628 PDE6AP16499 860 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 FLT3LGP49771 235 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 BACE1P56817 501 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 TTF1Q15361 905 aaPredicted RBP12.42□□□□□ -0.42
LDLR-214ENST00000560628 SH3D19Q5HYK7 790 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 ASCC2Q9H1I8 757 aaPredicted RBP12.42□□□□□ -0.42
LDLR-214ENST00000560628 BOLA2Q9H3K6 86 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 CHMP4BQ9H444 224 aaKnown RBP12.42□□□□□ -0.42
LDLR-214ENST00000560628 TMOD4Q9NZQ9 345 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 PNMA3Q9UL41 463 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 TAOK2Q9UL54 1235 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 ZBTB21Q9ULJ3 1066 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 HTTP42858 3142 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 DOCK1Q14185 1865 aa12.42□□□□□ -0.42
LDLR-214ENST00000560628 ADCY3O60266 1144 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms