RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 PHLPP1O60346 1717 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 hCG_1642624A0A1W2PR95 340 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 GNAT2P19087 354 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 NCBP1Q09161 790 aaKnown RBP11.58□□□□□ -0.56
LRRC28-216ENST00000559819 PPP4R3BQ5MIZ7 849 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 CCAR2Q8N163 923 aaKnown RBP11.58□□□□□ -0.56
LRRC28-216ENST00000559819 CNNM3Q8NE01 707 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 SHISA4Q96DD7 197 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 CCDC94Q9BW85 323 aaPredicted RBP11.58□□□□□ -0.56
LRRC28-216ENST00000559819 KCNH3Q9ULD8 1083 aa11.58□□□□□ -0.56
LRRC28-216ENST00000559819 COL1A1P02452 1464 aaPredicted RBP11.58□□□□□ -0.56
LRRC28-216ENST00000559819 WNK3Q9BYP7 1800 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 BCL9LQ86UU0 1499 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 EVX2Q03828 476 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 PDE4BQ07343 736 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 PTPN14Q15678 1187 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 KRBA2Q6ZNG9 492 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 BICDL1Q6ZP65 573 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 ZNF654Q8IZM8 581 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 CRACR2BQ8N4Y2 399 aaPredicted RBP11.57□□□□□ -0.56
LRRC28-216ENST00000559819 RGS22Q8NE09 1264 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 ANKRD7Q92527 254 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 PCDHB6Q9Y5E3 794 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 MYH14Q7Z406 1995 aaKnown RBP11.57□□□□□ -0.56
LRRC28-216ENST00000559819 CHD4Q14839 1912 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 FAM237AA0A1B0GTK4 181 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 ERICH2A1L162 156 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 FAM205CA6NFA0 338 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 PRDM1O75626 825 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 GSDMDP57764 484 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 TPM4P67936 248 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 GOLGA8FQ08AF8 430 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 GOLGA8DPQ0D2H9 430 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 SART3Q15020 963 aaKnown RBP11.57□□□□□ -0.56
LRRC28-216ENST00000559819 HSP90AA4PQ58FG1 418 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 NYAP1Q6ZVC0 841 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 PDCL2Q8N4E4 241 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 KRI1Q8N9T8 703 aaKnown RBP11.57□□□□□ -0.56
LRRC28-216ENST00000559819 CCDC112Q8NEF3 446 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 PCDHA5Q9Y5H7 936 aa11.57□□□□□ -0.56
LRRC28-216ENST00000559819 ROBO1Q9Y6N7 1651 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 NID2Q14112 1375 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 MAGEB6P1A0A0J9YX57 407 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 PRR29P0C7W0 189 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 BMP6P22004 513 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 SAFBQ15424 915 aaKnown RBP eCLIP11.56□□□□□ -0.56
LRRC28-216ENST00000559819 TRIM22Q8IYM9 498 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 GRAMD1CQ8IYS0 662 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 WASF1Q92558 559 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.56□□□□□ -0.56
LRRC28-216ENST00000559819 CICQ96RK0 1608 aaPredicted RBP11.56□□□□□ -0.56
LRRC28-216ENST00000559819 BCORQ6W2J9 1755 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 TNKSO95271 1327 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 FANCBQ8NB91 859 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 UBAC1Q9BSL1 405 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 IMPACTQ9P2X3 320 aa11.56□□□□□ -0.56
LRRC28-216ENST00000559819 FBXO2Q9UK22 296 aaPredicted RBP11.56□□□□□ -0.56
LRRC28-216ENST00000559819 RTL9Q8NET4 1388 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 NUTM2BA6NNL0 878 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 NUTM2EB1AL46 878 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 TMEM232C9JQI7 657 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 IKBKBO14920 756 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 DEXIO95424 95 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 KLRK1P26718 216 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 ZNF827Q17R98 1081 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 E4F1Q66K89 784 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 NUTM2AQ8IVF1 878 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 ZNF384Q8TF68 577 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 SERTAD1Q9UHV2 236 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 PAXBP1Q9Y5B6 917 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 MYL5Q02045 173 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 SEC23AQ15436 765 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 USP49Q70CQ1 688 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 ANKRD18AQ8IVF6 992 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 PDILTQ8N807 584 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 CDC5LQ99459 802 aaKnown RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 RIOK1Q9BRS2 568 aaKnown RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 RNF41Q9H4P4 317 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 CABP5Q9NP86 173 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 PRDM10Q9NQV6 1147 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 FANCLQ9NW38 375 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 VPS54Q9P1Q0 977 aa11.55□□□□□ -0.56
LRRC28-216ENST00000559819 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 V9GYY5 206 aaPredicted RBP11.55□□□□□ -0.56
LRRC28-216ENST00000559819 ZNF804BA4D1E1 1349 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 TAF1P21675 1872 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 POLR2DO15514 142 aaKnown RBP11.54□□□□□ -0.56
LRRC28-216ENST00000559819 PLEKHA8P1O95397 391 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 SERPINC1P01008 464 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 SFPQP23246 707 aaKnown RBP eCLIP11.54□□□□□ -0.56
LRRC28-216ENST00000559819 CBX1P83916 185 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 EARS2Q5JPH6 523 aaKnown RBP11.54□□□□□ -0.56
LRRC28-216ENST00000559819 CCDC24Q8N4L8 307 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 LINC00116Q8NCU8 138 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 CCDC150Q8NCX0 1101 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 CELF1Q92879 486 aaKnown RBP11.54□□□□□ -0.56
LRRC28-216ENST00000559819 SPDYE4A6NLX3 237 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 PTPREP23469 700 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 UBASH3AP57075 661 aa11.54□□□□□ -0.56
LRRC28-216ENST00000559819 MDM2Q00987 491 aaPredicted RBP11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms