RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 PAGE1O75459 146 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 ERCC5P28715 1186 aaPredicted RBP8.63□□□□□ -1.03
LRRC28-209ENST00000558861 RAD51AP2Q09MP3 1159 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 ZNF394Q53GI3 561 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 MSL1Q68DK7 614 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 SV2BQ7L1I2 683 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 ERMP1Q7Z2K6 904 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 CACTIN-AS1Q8N1I8 211 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 SLC7A3Q8WY07 619 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 CARD10Q9BWT7 1032 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 TMEM39AQ9NV64 488 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 SCAF11Q99590 1463 aaKnown RBP8.63□□□□□ -1.03
LRRC28-209ENST00000558861 RIMS2Q9UQ26 1411 aa8.63□□□□□ -1.03
LRRC28-209ENST00000558861 MYO5BQ9ULV0 1848 aa8.62□□□□□ -1.03
LRRC28-209ENST00000558861 ARHGEF15O94989 841 aa8.62□□□□□ -1.03
LRRC28-209ENST00000558861 DMRTC2Q8IXT2 367 aaPredicted RBP8.62□□□□□ -1.03
LRRC28-209ENST00000558861 LORP23490 312 aaPredicted RBP8.61□□□□□ -1.03
LRRC28-209ENST00000558861 SNRPNP63162 240 aaKnown RBP8.61□□□□□ -1.03
LRRC28-209ENST00000558861 USP48Q86UV5 1035 aa8.61□□□□□ -1.03
LRRC28-209ENST00000558861 KBTBD4Q9NVX7 518 aa8.61□□□□□ -1.03
LRRC28-209ENST00000558861 NRXN1Q9ULB1 1477 aa8.61□□□□□ -1.03
LRRC28-209ENST00000558861 ADAMTS13Q76LX8 1427 aa8.61□□□□□ -1.03
LRRC28-209ENST00000558861 PLEKHG1Q9ULL1 1385 aa8.61□□□□□ -1.03
LRRC28-209ENST00000558861 RPGRIP1LQ68CZ1 1315 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 FSCN2O14926 492 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 ANKLE2Q86XL3 938 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 STK35Q8TDR2 534 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 TRIM11Q96F44 468 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 SIN3AQ96ST3 1273 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 ENAMQ9NRM1 1142 aa8.6□□□□□ -1.03
LRRC28-209ENST00000558861 NPHP4O75161 1426 aaPredicted RBP8.6□□□□□ -1.03
LRRC28-209ENST00000558861 CLSPNQ9HAW4 1339 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 NRXN3Q9Y4C0 1643 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 LIG3P49916 1009 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 RACK1P63244 317 aaKnown RBP8.59□□□□□ -1.03
LRRC28-209ENST00000558861 PIP4K2BP78356 416 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 PPP2R3AQ06190 1150 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 SETDB1Q15047 1291 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 RASIP1Q5U651 963 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 PCNX4Q63HM2 1172 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 FAM117BQ6P1L5 589 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 ILDR2Q71H61 639 aa8.59□□□□□ -1.03
LRRC28-209ENST00000558861 DDX41Q9UJV9 622 aaKnown RBP8.59□□□□□ -1.03
LRRC28-209ENST00000558861 MYOM2P54296 1465 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 ADGRF5Q8IZF2 1346 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 IFT172Q9UG01 1749 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 SETBP1Q9Y6X0 1596 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 DEAF1O75398 565 aaPredicted RBP8.58□□□□□ -1.04
LRRC28-209ENST00000558861 GSTM4Q03013 218 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 C19orf57Q0VDD7 668 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 TTBK2Q6IQ55 1244 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 GALNT11Q8NCW6 608 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 PHC3Q8NDX5 983 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 RSRP1Q9BUV0 290 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 SRA1Q9HD15 236 aaKnown RBP8.58□□□□□ -1.04
LRRC28-209ENST00000558861 TLR6Q9Y2C9 796 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 KIF1BO60333 1816 aa8.58□□□□□ -1.04
LRRC28-209ENST00000558861 POLR1AO95602 1720 aaPredicted RBP8.57□□□□□ -1.04
LRRC28-209ENST00000558861 PIK3C2GO75747 1445 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 TM4SF5O14894 197 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 GBP2P32456 591 aaPredicted RBP8.57□□□□□ -1.04
LRRC28-209ENST00000558861 TRAPPC3LQ5T215 181 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 LINC00114Q6XXX2 140 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 SULF2Q8IWU5 870 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.57□□□□□ -1.04
LRRC28-209ENST00000558861 KLHDC7BQ96G42 594 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 TMEM74Q96NL1 305 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 TGIF2Q9GZN2 237 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 ACBD3Q9H3P7 528 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 SOX17Q9H6I2 414 aaPredicted RBP8.57□□□□□ -1.04
LRRC28-209ENST00000558861 PPLO60437 1756 aa8.57□□□□□ -1.04
LRRC28-209ENST00000558861 IQGAP1P46940 1657 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 MINDY4BA8MYZ0 360 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 BMP6P22004 513 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 NME2P22392 152 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 RGL3Q3MIN7 710 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 ZSCAN1Q8NBB4 408 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 WNT8BQ93098 351 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 NRSN2Q9GZP1 204 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 CCSER2Q9H7U1 834 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.56□□□□□ -1.04
LRRC28-209ENST00000558861 EID1Q9Y6B2 187 aa8.56□□□□□ -1.04
LRRC28-209ENST00000558861 PRAG1Q86YV5 1406 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 ASXL1Q8IXJ9 1541 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 LTBP4Q8N2S1 1624 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 SETD1AO15047 1707 aaKnown RBP8.55□□□□□ -1.04
LRRC28-209ENST00000558861 ECEL1O95672 775 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 RLBP1P12271 317 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 TFE3P19532 575 aaPredicted RBP8.55□□□□□ -1.04
LRRC28-209ENST00000558861 TNNI2P48788 182 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 ARL4DP49703 201 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 NLRP12P59046 1061 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 AGMOQ6ZNB7 445 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 RELL1Q8IUW5 271 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 FBXO41Q8TF61 875 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 RHOVQ96L33 236 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 OSGEPQ9NPF4 335 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 TBX22Q9Y458 520 aa8.55□□□□□ -1.04
LRRC28-209ENST00000558861 PTPRUQ92729 1446 aa8.54□□□□□ -1.04
LRRC28-209ENST00000558861 DIP2AQ14689 1571 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms