RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 HDGFL2Q7Z4V5 671 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-223ENST00000557076 DMRTC2Q8IXT2 367 aaPredicted RBP6.69□□□□□ -1.34
SCFD1-223ENST00000557076 RTCBQ9Y3I0 505 aaKnown RBP6.69□□□□□ -1.34
SCFD1-223ENST00000557076 KCPQ6ZWJ8 1503 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 RGPD5Q99666 1765 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 SBNO2Q9Y2G9 1366 aa6.69□□□□□ -1.34
SCFD1-223ENST00000557076 LY75O60449 1722 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L15C9J2P7 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L10C9JJH3 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L13C9JLJ4 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L12C9JPN9 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L11C9JVI0 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L21D6R901 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L18D6R9N7 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L22D6RA61 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L17D6RBQ6 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L19D6RCP7 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L20D6RJB6 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 CYP27B1O15528 508 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 GYS1P13807 737 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 LMNB1P20700 586 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 ARID4AP29374 1257 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-223ENST00000557076 INPP5BP32019 993 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 AMPHP49418 695 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 ARSDP51689 593 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 LBX1P52954 281 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 USP17L24Q0WX57 530 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 CRTC2Q53ET0 693 aaPredicted RBP6.68□□□□□ -1.34
SCFD1-223ENST00000557076 ANKMY2Q8IV38 441 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 TP53INP1Q96A56 240 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 PPP1R12CQ9BZL4 782 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 PCDH11XQ9BZA7 1347 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 PCDH11YQ9BZA8 1340 aa6.68□□□□□ -1.34
SCFD1-223ENST00000557076 TUBGCP6Q96RT7 1819 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 CPB1P15086 417 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 RFC4P35249 363 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 ITPK1Q13572 414 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 LRP8Q14114 963 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 DHX32Q7L7V1 743 aaKnown RBP6.67□□□□□ -1.34
SCFD1-223ENST00000557076 NBPF11Q86T75 865 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 TRPM4Q8TD43 1214 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 TTC9Q92623 222 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 CLUAP1Q96AJ1 413 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 CALR3Q96L12 384 aaKnown RBP6.67□□□□□ -1.34
SCFD1-223ENST00000557076 PUS7Q96PZ0 661 aaKnown RBP6.67□□□□□ -1.34
SCFD1-223ENST00000557076 LPIN3Q9BQK8 851 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 SSBP4Q9BWG4 385 aaPredicted RBP6.67□□□□□ -1.34
SCFD1-223ENST00000557076 SLC12A5Q9H2X9 1139 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 TERF2IPQ9NYB0 399 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 ASAP1Q9ULH1 1129 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 MAP3K19Q56UN5 1328 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 CNTNAP1P78357 1384 aa6.67□□□□□ -1.34
SCFD1-223ENST00000557076 CD163L1Q9NR16 1453 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 RPS6KA4O75676 772 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 FBLN1P23142 703 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 GPLD1P80108 840 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 MAP2K1Q02750 393 aaPredicted RBP6.66□□□□□ -1.34
SCFD1-223ENST00000557076 DGKZQ13574 1117 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 ELMSAN1Q6PJG2 1045 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 FBXO11Q86XK2 927 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 WFDC8Q8IUA0 241 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 TMC1Q8TDI8 760 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 VTI1AQ96AJ9 217 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 MYO19Q96H55 970 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 COG3Q96JB2 828 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 VRTNQ9H8Y1 702 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.66□□□□□ -1.34
SCFD1-223ENST00000557076 KLK14Q9P0G3 267 aa6.66□□□□□ -1.34
SCFD1-223ENST00000557076 CCDC85CA6NKD9 419 aa6.65□□□□□ -1.34
SCFD1-223ENST00000557076 RARAP10276 462 aa6.65□□□□□ -1.34
SCFD1-223ENST00000557076 GRNP28799 593 aaKnown RBP6.65□□□□□ -1.34
SCFD1-223ENST00000557076 GRIK5Q16478 980 aa6.65□□□□□ -1.34
SCFD1-223ENST00000557076 C11orf91Q3C1V1 193 aa6.65□□□□□ -1.34
SCFD1-223ENST00000557076 PERM1Q5SV97 790 aa6.65□□□□□ -1.34
SCFD1-223ENST00000557076 ATG3Q9NT62 314 aa6.65□□□□□ -1.34
SCFD1-223ENST00000557076 RAB3GAP2Q9H2M9 1393 aa6.65□□□□□ -1.35
SCFD1-223ENST00000557076 MEGF6O75095 1541 aa6.65□□□□□ -1.35
SCFD1-223ENST00000557076 PDE4DIPQ5VU43 2346 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 TMEM88BA6NKF7 163 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 MICAL2O94851 1124 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 HSPA8P11142 646 aaKnown RBP6.64□□□□□ -1.35
SCFD1-223ENST00000557076 TARSP26639 723 aaKnown RBP6.64□□□□□ -1.35
SCFD1-223ENST00000557076 WEE1P30291 646 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 TM4SF1P30408 202 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 CHRNA5P30532 468 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 NRLP54845 237 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 IGF2-ASQ6U949 168 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 KRT25Q7Z3Z0 450 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 USHBP1Q8N6Y0 703 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 IFT43Q96FT9 208 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 TMOD3Q9NYL9 352 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 ZFATQ9P243 1243 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 SPG7Q9UQ90 795 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 PASKQ96RG2 1323 aa6.64□□□□□ -1.35
SCFD1-223ENST00000557076 KDM6AO15550 1401 aaPredicted RBP6.64□□□□□ -1.35
SCFD1-223ENST00000557076 EDC4Q6P2E9 1401 aaKnown RBP6.64□□□□□ -1.35
SCFD1-223ENST00000557076 ZBTB42B2RXF5 422 aa6.63□□□□□ -1.35
SCFD1-223ENST00000557076 LGR5O75473 907 aa6.63□□□□□ -1.35
SCFD1-223ENST00000557076 LMOD1P29536 600 aaPredicted RBP6.63□□□□□ -1.35
SCFD1-223ENST00000557076 DEFB115Q30KQ5 88 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms