RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 USP40Q9NVE5 1235 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 SLC45A1Q9Y2W3 748 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 AFG3L2Q9Y4W6 797 aa11.69□□□□□ -0.54
SYNE2-224ENST00000557024 ATRNL1Q5VV63 1379 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 VAMP4O75379 141 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 PDE8BO95263 885 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 SLURP2P0DP57 97 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 SLC4A10Q6U841 1118 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 CCDC84Q86UT8 332 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-224ENST00000557024 EFCAB3Q8N7B9 438 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 FAM161BQ96MY7 647 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 GUCD1Q96NT3 240 aa11.68□□□□□ -0.54
SYNE2-224ENST00000557024 HMX1Q9NP08 348 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-224ENST00000557024 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.68□□□□□ -0.54
SYNE2-224ENST00000557024 IL16Q14005 1332 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 ALDH1L1O75891 902 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 IFIT1P09914 478 aaKnown RBP11.67□□□□□ -0.54
SYNE2-224ENST00000557024 NBPF7P0C2Y1 421 aaPredicted RBP11.67□□□□□ -0.54
SYNE2-224ENST00000557024 PRDX5P30044 214 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 FAM110CQ1W6H9 321 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 CCDC27Q2M243 656 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 TREML2Q5T2D2 321 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 FAM9BQ8IZU0 186 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 KLHDC4Q8TBB5 520 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 WDR66Q8TBY9 1149 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 BICC1Q9H694 974 aaKnown RBP11.67□□□□□ -0.54
SYNE2-224ENST00000557024 AGTPBP1Q9UPW5 1226 aa11.67□□□□□ -0.54
SYNE2-224ENST00000557024 LRRFIP2Q9Y608 721 aaKnown RBP11.67□□□□□ -0.54
SYNE2-224ENST00000557024 ALPK3Q96L96 1907 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 PFASO15067 1338 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 RGS3P49796 1198 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 MDM2Q00987 491 aaPredicted RBP11.66□□□□□ -0.54
SYNE2-224ENST00000557024 EXOSC9Q06265 439 aaKnown RBP11.66□□□□□ -0.54
SYNE2-224ENST00000557024 PUM3Q15397 648 aaKnown RBP11.66□□□□□ -0.54
SYNE2-224ENST00000557024 CCDC184Q52MB2 194 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 ZSCAN29Q8IWY8 852 aaPredicted RBP11.66□□□□□ -0.54
SYNE2-224ENST00000557024 SRCIN1Q9C0H9 1055 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 OGDHLQ9ULD0 1010 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 VCANP13611 3396 aa11.66□□□□□ -0.54
SYNE2-224ENST00000557024 KIF16BQ96L93 1317 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 POTEB2H3BUK9 544 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 FGFR2P21802 821 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 RABL6Q3YEC7 729 aaPredicted RBP11.65□□□□□ -0.54
SYNE2-224ENST00000557024 SH3BP5LQ7L8J4 393 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 ANKRD44Q8N8A2 993 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 TRIB2Q92519 343 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 GJD2Q9UKL4 321 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 PNMA3Q9UL41 463 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 MGAMO43451 1857 aa11.65□□□□□ -0.54
SYNE2-224ENST00000557024 LAMA2P24043 3122 aaKnown RBP11.64□□□□□ -0.55
SYNE2-224ENST00000557024 CTNND1O60716 968 aaKnown RBP11.64□□□□□ -0.55
SYNE2-224ENST00000557024 LDHBP07195 334 aaKnown RBP11.64□□□□□ -0.55
SYNE2-224ENST00000557024 LRRC26Q2I0M4 334 aa11.64□□□□□ -0.55
SYNE2-224ENST00000557024 FAM109BQ6ICB4 259 aaPredicted RBP11.64□□□□□ -0.55
SYNE2-224ENST00000557024 PRDM6Q9NQX0 595 aa11.64□□□□□ -0.55
SYNE2-224ENST00000557024 DDTLA6NHG4 134 aaPredicted RBP11.63□□□□□ -0.55
SYNE2-224ENST00000557024 ENTPD3O75355 529 aa11.63□□□□□ -0.55
SYNE2-224ENST00000557024 COL6A1P12109 1028 aa11.63□□□□□ -0.55
SYNE2-224ENST00000557024 SLC5A1P13866 664 aa11.63□□□□□ -0.55
SYNE2-224ENST00000557024 GCLCP48506 637 aaPredicted RBP11.63□□□□□ -0.55
SYNE2-224ENST00000557024 MAP3K21Q5TCX8 1036 aa11.63□□□□□ -0.55
SYNE2-224ENST00000557024 IDI2Q9BXS1 227 aa11.63□□□□□ -0.55
SYNE2-224ENST00000557024 DDX60LQ5H9U9 1706 aaKnown RBP11.63□□□□□ -0.55
SYNE2-224ENST00000557024 EYSQ5T1H1 3165 aa11.63□□□□□ -0.55
SYNE2-224ENST00000557024 UTYO14607 1347 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 FAM196BA6NMK8 535 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 PPP1R37O75864 691 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 CYP2B6P20813 491 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 MAP3K10Q02779 954 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 SPP2Q13103 211 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 PICALMQ13492 652 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 PROCA1Q8NCQ7 364 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-224ENST00000557024 LPIN2Q92539 896 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 ASCC2Q9H1I8 757 aaPredicted RBP11.62□□□□□ -0.55
SYNE2-224ENST00000557024 DDX4Q9NQI0 724 aaKnown RBP11.62□□□□□ -0.55
SYNE2-224ENST00000557024 SPTBN5Q9NRC6 3674 aaKnown RBP11.62□□□□□ -0.55
SYNE2-224ENST00000557024 RFX7Q2KHR2 1363 aa11.62□□□□□ -0.55
SYNE2-224ENST00000557024 HMGCS2P54868 508 aa11.61□□□□□ -0.55
SYNE2-224ENST00000557024 ZNF697Q5TEC3 545 aa11.61□□□□□ -0.55
SYNE2-224ENST00000557024 MAFAQ8NHW3 353 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-224ENST00000557024 CDX2Q99626 313 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-224ENST00000557024 LBHD1Q9BQE6 289 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-224ENST00000557024 SALL2Q9Y467 1007 aaPredicted RBP11.61□□□□□ -0.55
SYNE2-224ENST00000557024 COL2A1P02458 1487 aaPredicted RBP11.6□□□□□ -0.55
SYNE2-224ENST00000557024 PEX10O60683 326 aa11.6□□□□□ -0.55
SYNE2-224ENST00000557024 CCND3P30281 292 aaPredicted RBP11.6□□□□□ -0.55
SYNE2-224ENST00000557024 CACNB2Q08289 660 aaPredicted RBP11.6□□□□□ -0.55
SYNE2-224ENST00000557024 PABPC4Q13310 644 aaKnown RBP eCLIP11.6□□□□□ -0.55
SYNE2-224ENST00000557024 ZNF280CQ8ND82 737 aa11.6□□□□□ -0.55
SYNE2-224ENST00000557024 GNL3LQ9NVN8 582 aaKnown RBP11.6□□□□□ -0.55
SYNE2-224ENST00000557024 TRPC6Q9Y210 931 aa11.6□□□□□ -0.55
SYNE2-224ENST00000557024 GAKO14976 1311 aa11.6□□□□□ -0.55
SYNE2-224ENST00000557024 SALL1Q9NSC2 1324 aa11.6□□□□□ -0.55
SYNE2-224ENST00000557024 EYA2O00167 538 aa11.59□□□□□ -0.55
SYNE2-224ENST00000557024 ZKSCAN1P17029 563 aaPredicted RBP11.59□□□□□ -0.55
SYNE2-224ENST00000557024 DZIP1Q86YF9 867 aaKnown RBP11.59□□□□□ -0.55
SYNE2-224ENST00000557024 FBXO22Q8NEZ5 403 aa11.59□□□□□ -0.55
SYNE2-224ENST00000557024 SOCS4Q8WXH5 440 aa11.59□□□□□ -0.55
SYNE2-224ENST00000557024 NUDT12Q9BQG2 462 aa11.59□□□□□ -0.55
SYNE2-224ENST00000557024 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms