RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 FKBP4Q02790 459 aaKnown RBP eCLIP6.25□□□□□ -1.41
SRP54-212ENST00000556992 ORC1Q13415 861 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 OGFOD3Q6PK18 319 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 NPHS2Q9NP85 383 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 ADAMTS6Q9UKP5 1117 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 NUP155O75694 1391 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 C9orf84Q5VXU9 1444 aa6.25□□□□□ -1.41
SRP54-212ENST00000556992 HECW2Q9P2P5 1572 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 ADGRL2O95490 1459 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 MBD5Q9P267 1494 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 ANKRD30BQ9BXX2 1392 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 TMPRSS2O15393 492 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 B3GALT4O96024 378 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 FAM87AP0C7U9 286 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 CD8BP10966 210 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 EHD4Q9H223 541 aa6.24□□□□□ -1.41
SRP54-212ENST00000556992 GSX1Q9H4S2 264 aaPredicted RBP6.24□□□□□ -1.41
SRP54-212ENST00000556992 ADGRL1O94910 1474 aa6.23□□□□□ -1.41
SRP54-212ENST00000556992 SHANK2Q9UPX8 1470 aa6.23□□□□□ -1.41
SRP54-212ENST00000556992 KIF15Q9NS87 1388 aa6.23□□□□□ -1.41
SRP54-212ENST00000556992 LEFTY1O75610 366 aa6.23□□□□□ -1.41
SRP54-212ENST00000556992 KRTAP4-9Q9BYQ8 210 aa6.23□□□□□ -1.41
SRP54-212ENST00000556992 RC3H2Q9HBD1 1191 aaKnown RBP6.23□□□□□ -1.41
SRP54-212ENST00000556992 KIF14Q15058 1648 aa6.23□□□□□ -1.41
SRP54-212ENST00000556992 SPAG9O60271 1321 aaKnown RBP6.23□□□□□ -1.41
SRP54-212ENST00000556992 KIF13AQ9H1H9 1805 aa6.22□□□□□ -1.41
SRP54-212ENST00000556992 RNASE1P07998 156 aaKnown RBP6.22□□□□□ -1.41
SRP54-212ENST00000556992 SF3B2Q13435 895 aaKnown RBP6.22□□□□□ -1.41
SRP54-212ENST00000556992 AFAP1Q8N556 730 aa6.22□□□□□ -1.41
SRP54-212ENST00000556992 CCDC86Q9H6F5 360 aaKnown RBP6.22□□□□□ -1.41
SRP54-212ENST00000556992 LRRIQ1Q96JM4 1722 aa6.22□□□□□ -1.41
SRP54-212ENST00000556992 CCDC141Q6ZP82 1450 aa6.22□□□□□ -1.41
SRP54-212ENST00000556992 FAAP100Q0VG06 881 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 HP1BP3Q5SSJ5 553 aaPredicted RBP6.21□□□□□ -1.42
SRP54-212ENST00000556992 CCDC82Q8N4S0 544 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 FAM168AQ92567 244 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 FANCD2OSQ96PS1 177 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 MBNL3Q9NUK0 354 aaKnown RBP6.21□□□□□ -1.42
SRP54-212ENST00000556992 LMTK3Q96Q04 1460 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 WDR7Q9Y4E6 1490 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 DNMT1P26358 1616 aaKnown RBP6.21□□□□□ -1.42
SRP54-212ENST00000556992 ADCY10Q96PN6 1610 aa6.21□□□□□ -1.42
SRP54-212ENST00000556992 ARHGAP5Q13017 1502 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 DIP2BQ9P265 1576 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 ASXL2Q76L83 1435 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 H3BRB1 525 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 ZNF862O60290 1169 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 HCLS1P14317 486 aaPredicted RBP6.2□□□□□ -1.42
SRP54-212ENST00000556992 ITPKAP23677 461 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 SERPINB4P48594 390 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 CYP27C1Q4G0S4 372 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 KIAA0319Q5VV43 1072 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 LRRN4CLQ8ND94 238 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 GLIS3Q8NEA6 775 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 NETO1Q8TDF5 533 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 TUT1Q9H6E5 874 aaKnown RBP6.2□□□□□ -1.42
SRP54-212ENST00000556992 PIDD1Q9HB75 910 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 ABCB6Q9NP58 842 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 PRDM7Q9NQW5 492 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 CRIM1Q9NZV1 1036 aa6.2□□□□□ -1.42
SRP54-212ENST00000556992 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.2□□□□□ -1.42
SRP54-212ENST00000556992 RTEL1-TNFRSF6BF6WH68 1400 aa6.19□□□□□ -1.42
SRP54-212ENST00000556992 RNGTTO60942 597 aaKnown RBP6.19□□□□□ -1.42
SRP54-212ENST00000556992 CENPBP07199 599 aaPredicted RBP6.19□□□□□ -1.42
SRP54-212ENST00000556992 FUT4P22083 530 aa6.19□□□□□ -1.42
SRP54-212ENST00000556992 TTLL4Q14679 1199 aa6.19□□□□□ -1.42
SRP54-212ENST00000556992 STK11IPQ8N1F8 1099 aa6.19□□□□□ -1.42
SRP54-212ENST00000556992 BRPF3Q9ULD4 1205 aa6.19□□□□□ -1.42
SRP54-212ENST00000556992 ARHGEF5Q12774 1597 aa6.18□□□□□ -1.42
SRP54-212ENST00000556992 DENND4BO75064 1496 aaPredicted RBP6.18□□□□□ -1.42
SRP54-212ENST00000556992 ITIH2P19823 946 aa6.18□□□□□ -1.42
SRP54-212ENST00000556992 DDX10Q13206 875 aaKnown RBP6.18□□□□□ -1.42
SRP54-212ENST00000556992 ECM1Q16610 540 aa6.18□□□□□ -1.42
SRP54-212ENST00000556992 AOC3Q16853 763 aa6.18□□□□□ -1.42
SRP54-212ENST00000556992 SMYD4Q8IYR2 804 aaPredicted RBP6.18□□□□□ -1.42
SRP54-212ENST00000556992 DDX54Q8TDD1 881 aaKnown RBP6.18□□□□□ -1.42
SRP54-212ENST00000556992 DISC1Q9NRI5 854 aa6.18□□□□□ -1.42
SRP54-212ENST00000556992 KDM6BO15054 1643 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 SCAPERQ9BY12 1400 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 ITSN2Q9NZM3 1697 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 PZPP20742 1482 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 RPRD2Q5VT52 1461 aaKnown RBP6.17□□□□□ -1.42
SRP54-212ENST00000556992 ARAP3Q8WWN8 1544 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 BIN1O00499 593 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 EIF4EBP3O60516 100 aaPredicted RBP6.17□□□□□ -1.42
SRP54-212ENST00000556992 GADD45BO75293 160 aaPredicted RBP6.17□□□□□ -1.42
SRP54-212ENST00000556992 HSPA5P11021 654 aaKnown RBP6.17□□□□□ -1.42
SRP54-212ENST00000556992 ID3Q02535 119 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 AP3B2Q13367 1082 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 PI4K2BQ8TCG2 481 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 ZFYVE1Q9HBF4 777 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 PLAGL2Q9UPG8 496 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 MTMR7Q9Y216 660 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 PCDHGC5Q9Y5F6 944 aa6.17□□□□□ -1.42
SRP54-212ENST00000556992 CD109Q6YHK3 1445 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 TRAPPC8Q9Y2L5 1435 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 ARHGEF12Q9NZN5 1544 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 ICMTO60725 284 aa6.16□□□□□ -1.42
SRP54-212ENST00000556992 CPNE3O75131 537 aaKnown RBP6.16□□□□□ -1.42
SRP54-212ENST00000556992 NEFMP07197 916 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms