RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 FAM196AQ6ZSG2 479 aa7.72□□□□□ -1.17
SCFD1-221ENST00000556534 FBXO27Q8NI29 283 aa7.72□□□□□ -1.17
SCFD1-221ENST00000556534 LRRC3Q9BY71 257 aa7.72□□□□□ -1.17
SCFD1-221ENST00000556534 C1GALT1Q9NS00 363 aa7.72□□□□□ -1.17
SCFD1-221ENST00000556534 SUPT16HQ9Y5B9 1047 aaKnown RBP7.72□□□□□ -1.17
SCFD1-221ENST00000556534 GSC2O15499 205 aa7.71□□□□□ -1.18
SCFD1-221ENST00000556534 RNGTTO60942 597 aaKnown RBP7.71□□□□□ -1.18
SCFD1-221ENST00000556534 ADMP35318 185 aa7.71□□□□□ -1.18
SCFD1-221ENST00000556534 RACK1P63244 317 aaKnown RBP7.71□□□□□ -1.18
SCFD1-221ENST00000556534 ZNF296Q8WUU4 475 aaPredicted RBP7.71□□□□□ -1.18
SCFD1-221ENST00000556534 WNT10AQ9GZT5 417 aa7.71□□□□□ -1.18
SCFD1-221ENST00000556534 PICK1Q9NRD5 415 aa7.71□□□□□ -1.18
SCFD1-221ENST00000556534 DDX41Q9UJV9 622 aaKnown RBP7.71□□□□□ -1.18
SCFD1-221ENST00000556534 TACC3Q9Y6A5 838 aa7.71□□□□□ -1.18
SCFD1-221ENST00000556534 BPNT1O95861 308 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 CRKP46108 304 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 MPP2Q14168 576 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 C9orf131Q5VYM1 1079 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 ZAR1Q86SH2 424 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 NT5DC4Q86YG4 428 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 SHISA5Q8N114 240 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 MFSD14AQ96MC6 490 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 FBRSQ9HAH7 460 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 LGR6Q9HBX8 967 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 PCOLCE2Q9UKZ9 415 aa7.7□□□□□ -1.18
SCFD1-221ENST00000556534 POLR3KQ9Y2Y1 108 aaPredicted RBP7.7□□□□□ -1.18
SCFD1-221ENST00000556534 F13BP05160 661 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 TCF3P15923 654 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 GRK4P32298 578 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 RAD51AP2Q09MP3 1159 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 CDK5R2Q13319 367 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 REC114Q7Z4M0 266 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 ZDHHC13Q8IUH4 622 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 KIAA0825Q8IV33 1275 aa7.69□□□□□ -1.18
SCFD1-221ENST00000556534 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.69□□□□□ -1.18
SCFD1-221ENST00000556534 TLR3O15455 904 aaKnown RBP7.68□□□□□ -1.18
SCFD1-221ENST00000556534 ETF1P62495 437 aaKnown RBP7.68□□□□□ -1.18
SCFD1-221ENST00000556534 SLC51AQ86UW1 340 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 SHKBP1Q8TBC3 707 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 ZNF507Q8TCN5 953 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 TBC1D32Q96NH3 1257 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 PSMG3-AS1Q96PY0 264 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 SPON2Q9BUD6 331 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 IGSF5Q9NSI5 407 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 UBP1Q9NZI7 540 aa7.68□□□□□ -1.18
SCFD1-221ENST00000556534 NKG7Q16617 165 aa7.67□□□□□ -1.18
SCFD1-221ENST00000556534 DIEXFQ68CQ4 756 aaKnown RBP7.67□□□□□ -1.18
SCFD1-221ENST00000556534 FBXL6Q8N531 539 aa7.67□□□□□ -1.18
SCFD1-221ENST00000556534 KCT2Q8NC54 265 aa7.67□□□□□ -1.18
SCFD1-221ENST00000556534 EAF1Q96JC9 268 aaPredicted RBP7.67□□□□□ -1.18
SCFD1-221ENST00000556534 NT5C1AQ9BXI3 368 aa7.67□□□□□ -1.18
SCFD1-221ENST00000556534 SSU72Q9NP77 194 aaKnown RBP7.67□□□□□ -1.18
SCFD1-221ENST00000556534 CORINQ9Y5Q5 1042 aa7.67□□□□□ -1.18
SCFD1-221ENST00000556534 ROBO2Q9HCK4 1378 aa7.67□□□□□ -1.18
SCFD1-221ENST00000556534 FAM170BA6NMN3 283 aa7.66□□□□□ -1.18
SCFD1-221ENST00000556534 CAP2P40123 477 aa7.66□□□□□ -1.18
SCFD1-221ENST00000556534 SLBPQ14493 270 aaKnown RBP eCLIP7.66□□□□□ -1.18
SCFD1-221ENST00000556534 ARMCX6Q7L4S7 300 aa7.66□□□□□ -1.18
SCFD1-221ENST00000556534 ZNF654Q8IZM8 581 aa7.66□□□□□ -1.18
SCFD1-221ENST00000556534 PRR36Q9H6K5 1346 aa7.66□□□□□ -1.18
SCFD1-221ENST00000556534 PRR19A6NJB7 356 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 WDR64B1ANS9 1081 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 E9PSI1 815 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 GRIN3BO60391 1043 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 PGRP06401 933 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 PDE4BQ07343 736 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 APOBRQ0VD83 1088 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 CWF19L2Q2TBE0 894 aaKnown RBP7.65□□□□□ -1.18
SCFD1-221ENST00000556534 CDC37L1Q7L3B6 337 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 HID1Q8IV36 788 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 TGIF2Q9GZN2 237 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 TJP2Q9UDY2 1190 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 ADAM30Q9UKF2 790 aa7.65□□□□□ -1.18
SCFD1-221ENST00000556534 LRIG2O94898 1065 aa7.64□□□□□ -1.19
SCFD1-221ENST00000556534 HTR3BO95264 441 aa7.64□□□□□ -1.19
SCFD1-221ENST00000556534 FAM87AP0C7U9 286 aa7.64□□□□□ -1.19
SCFD1-221ENST00000556534 ZNF765Q7L2R6 523 aa7.64□□□□□ -1.19
SCFD1-221ENST00000556534 MRPL41Q8IXM3 137 aaKnown RBP7.64□□□□□ -1.19
SCFD1-221ENST00000556534 TOP6BLQ8N6T0 577 aa7.64□□□□□ -1.19
SCFD1-221ENST00000556534 ACSF2Q96CM8 615 aaPredicted RBP7.64□□□□□ -1.19
SCFD1-221ENST00000556534 BRMS1Q9HCU9 246 aa7.64□□□□□ -1.19
SCFD1-221ENST00000556534 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.64□□□□□ -1.19
SCFD1-221ENST00000556534 LEFTY1O75610 366 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 CST3P01034 146 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-221ENST00000556534 TGFB1P01137 390 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 PAK2Q13177 524 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 CPSF6Q16630 551 aaKnown RBP eCLIP7.63□□□□□ -1.19
SCFD1-221ENST00000556534 SEZ6Q53EL9 994 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 TMEM201Q5SNT2 666 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 PRAMEF13Q5VWM6 474 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 SLITRK4Q8IW52 837 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 TMEM87BQ96K49 555 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 METTL22Q9BUU2 404 aaPredicted RBP7.63□□□□□ -1.19
SCFD1-221ENST00000556534 DUSP23Q9BVJ7 150 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 OSBPL1AQ9BXW6 950 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 FOXQ1Q9C009 403 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 REV1Q9UBZ9 1251 aa7.63□□□□□ -1.19
SCFD1-221ENST00000556534 DNAJA2O60884 412 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 PLCG1P19174 1290 aa7.62□□□□□ -1.19
SCFD1-221ENST00000556534 OGFOD3Q6PK18 319 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms