RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 C17orf99Q6UX52 265 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 Q7L0L9 218 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 ERO1BQ86YB8 467 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 PROCA1Q8NCQ7 364 aaPredicted RBP12.62□□□□□ -0.39
SCFD1-220ENST00000556486 U2AF1L4Q8WU68 220 aaKnown RBP12.62□□□□□ -0.39
SCFD1-220ENST00000556486 PTCD2Q8WV60 388 aaKnown RBP12.62□□□□□ -0.39
SCFD1-220ENST00000556486 CNNM1Q9NRU3 951 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 GABRQQ9UN88 632 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 UTYO14607 1347 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 FAM205AQ6ZU69 1335 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 ZNF521Q96K83 1311 aa12.62□□□□□ -0.39
SCFD1-220ENST00000556486 CUL9Q8IWT3 2517 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 AK9Q5TCS8 1911 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 GJB1P08034 283 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 ELNP15502 786 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 ZEB1P37275 1124 aaPredicted RBP12.61□□□□□ -0.39
SCFD1-220ENST00000556486 CCDC57Q2TAC2 916 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 ARSIQ5FYB1 569 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 LDHAL6AQ6ZMR3 332 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 TDRD7Q8NHU6 1098 aaKnown RBP12.61□□□□□ -0.39
SCFD1-220ENST00000556486 POM121Q96HA1 1249 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 EPAS1Q99814 870 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 PUS3Q9BZE2 481 aaKnown RBP12.61□□□□□ -0.39
SCFD1-220ENST00000556486 NR2E3Q9Y5X4 410 aa12.61□□□□□ -0.39
SCFD1-220ENST00000556486 FAM205CA6NFA0 338 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 MAP3K7O43318 606 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 GNRH1P01148 92 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 CYP2C8P10632 490 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 HIBADHP31937 336 aaKnown RBP12.6□□□□□ -0.39
SCFD1-220ENST00000556486 PRMT2P55345 433 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 PPIL2Q13356 520 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 NKX2-3Q8TAU0 364 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 FAM84BQ96KN1 310 aaPredicted RBP12.6□□□□□ -0.39
SCFD1-220ENST00000556486 ADGRA2Q96PE1 1338 aa12.6□□□□□ -0.39
SCFD1-220ENST00000556486 UBE4AQ14139 1066 aa12.59□□□□□ -0.39
SCFD1-220ENST00000556486 RABL6Q3YEC7 729 aaPredicted RBP12.59□□□□□ -0.39
SCFD1-220ENST00000556486 DIS3LQ8TF46 1054 aaKnown RBP12.59□□□□□ -0.39
SCFD1-220ENST00000556486 KAZALD1Q96I82 304 aa12.59□□□□□ -0.39
SCFD1-220ENST00000556486 HS3ST6Q96QI5 342 aa12.59□□□□□ -0.39
SCFD1-220ENST00000556486 SRCIN1Q9C0H9 1055 aa12.59□□□□□ -0.39
SCFD1-220ENST00000556486 TFRCP02786 760 aaKnown RBP12.58□□□□□ -0.4
SCFD1-220ENST00000556486 HOXD10P28358 340 aa12.58□□□□□ -0.4
SCFD1-220ENST00000556486 UBXN2AP68543 259 aa12.58□□□□□ -0.4
SCFD1-220ENST00000556486 DEFB118Q96PH6 123 aa12.58□□□□□ -0.4
SCFD1-220ENST00000556486 POLR3EQ9NVU0 708 aa12.58□□□□□ -0.4
SCFD1-220ENST00000556486 C9orf78Q9NZ63 289 aaPredicted RBP12.58□□□□□ -0.4
SCFD1-220ENST00000556486 ZMYND8Q9ULU4 1186 aaPredicted RBP12.58□□□□□ -0.4
SCFD1-220ENST00000556486 ADCY3O60266 1144 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 FRAT2O75474 233 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-220ENST00000556486 SGPL1O95470 568 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 INHAP05111 366 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 SYN1P17600 705 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 TCP10Q12799 353 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 MOGSQ13724 837 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 ANKRD23Q86SG2 305 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 VPS37DQ86XT2 251 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 C7orf61Q8IZ16 206 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 DEFB123Q8N688 67 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 KHSRPQ92945 711 aaKnown RBP eCLIP12.57□□□□□ -0.43e-6■□□□□ 11.2
SCFD1-220ENST00000556486 TEKT1Q969V4 418 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 CCDC97Q96F63 343 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-220ENST00000556486 ZCCHC17Q9NP64 241 aaKnown RBP12.57□□□□□ -0.4
SCFD1-220ENST00000556486 FAM217BQ9NTX9 383 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-220ENST00000556486 TMOD2Q9NZR1 351 aa12.57□□□□□ -0.4
SCFD1-220ENST00000556486 SALL2Q9Y467 1007 aaPredicted RBP12.57□□□□□ -0.4
SCFD1-220ENST00000556486 NBPF7P0C2Y1 421 aaPredicted RBP12.56□□□□□ -0.4
SCFD1-220ENST00000556486 FCGRTP55899 365 aa12.56□□□□□ -0.4
SCFD1-220ENST00000556486 PPATQ06203 517 aa12.56□□□□□ -0.4
SCFD1-220ENST00000556486 PAWRQ96IZ0 340 aaKnown RBP12.56□□□□□ -0.4
SCFD1-220ENST00000556486 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.56□□□□□ -0.4
SCFD1-220ENST00000556486 ZNF341Q9BYN7 854 aa12.56□□□□□ -0.4
SCFD1-220ENST00000556486 PCDHGA4Q9Y5G9 962 aa12.56□□□□□ -0.4
SCFD1-220ENST00000556486 MROH5Q6ZUA9 1318 aa12.56□□□□□ -0.4
SCFD1-220ENST00000556486 MYH13Q9UKX3 1938 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 FLT3LGP49771 235 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 DCAF15Q66K64 600 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 APOBEC3HQ6NTF7 200 aaKnown RBP12.55□□□□□ -0.4
SCFD1-220ENST00000556486 GPAT2Q6NUI2 795 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 FBXO33Q7Z6M2 555 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 SUCLG2Q96I99 432 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 PTPRCP08575 1304 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 KIF16BQ96L93 1317 aa12.55□□□□□ -0.4
SCFD1-220ENST00000556486 EYSQ5T1H1 3165 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 SLURP2P0DP57 97 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 BCRP11274 1271 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 BCAMP50895 628 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 HDLBPQ00341 1268 aaKnown RBP12.54□□□□□ -0.4
SCFD1-220ENST00000556486 SLC4A10Q6U841 1118 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 GADL1Q6ZQY3 521 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 VGLL2Q8N8G2 317 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 PARK7Q99497 189 aaKnown RBP12.54□□□□□ -0.4
SCFD1-220ENST00000556486 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.54□□□□□ -0.4
SCFD1-220ENST00000556486 KCNH4Q9UQ05 1017 aa12.54□□□□□ -0.4
SCFD1-220ENST00000556486 LAMA2P24043 3122 aaKnown RBP12.54□□□□□ -0.4
SCFD1-220ENST00000556486 A0A1W2PPC1 479 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 NFIAQ12857 509 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 DIXDC1Q155Q3 683 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 TSR1Q2NL82 804 aaKnown RBP12.53□□□□□ -0.4
SCFD1-220ENST00000556486 LRRC24Q50LG9 513 aa12.53□□□□□ -0.4
SCFD1-220ENST00000556486 MYSM1Q5VVJ2 828 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms