RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CEACAM5P06731 702 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 LIG3P49916 1009 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 OXCT1P55809 520 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 MAP3K11Q16584 847 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 IFI16Q16666 785 aaKnown RBP9.16□□□□□ -0.94
PRPF39-209ENST00000556353 WIPI1Q5MNZ9 446 aaPredicted RBP9.16□□□□□ -0.94
PRPF39-209ENST00000556353 MEI1Q5TIA1 1274 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.16□□□□□ -0.94
PRPF39-209ENST00000556353 GTF2IRD1Q9UHL9 959 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 SNCAIPQ9Y6H5 919 aa9.16□□□□□ -0.94
PRPF39-209ENST00000556353 CCDC27Q2M243 656 aa9.15□□□□□ -0.94
PRPF39-209ENST00000556353 ZNF574Q6ZN55 896 aaPredicted RBP9.15□□□□□ -0.94
PRPF39-209ENST00000556353 AGMOQ6ZNB7 445 aa9.15□□□□□ -0.94
PRPF39-209ENST00000556353 ARMCX6Q7L4S7 300 aa9.15□□□□□ -0.94
PRPF39-209ENST00000556353 FBXO33Q7Z6M2 555 aa9.15□□□□□ -0.94
PRPF39-209ENST00000556353 WNT10AQ9GZT5 417 aa9.15□□□□□ -0.94
PRPF39-209ENST00000556353 GZF1Q9H116 711 aaPredicted RBP9.15□□□□□ -0.94
PRPF39-209ENST00000556353 U3KQE9 123 aa9.15□□□□□ -0.94
PRPF39-209ENST00000556353 LRIG2O94898 1065 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 RLBP1P12271 317 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 ERCC3P19447 782 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 ETF1P62495 437 aaKnown RBP9.14□□□□□ -0.95
PRPF39-209ENST00000556353 BNIP3Q12983 259 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 SEPT6Q14141 434 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 TAF1CQ15572 869 aaPredicted RBP9.14□□□□□ -0.95
PRPF39-209ENST00000556353 TMC4Q7Z404 712 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 SPRED2Q7Z698 418 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 HEXIM2Q96MH2 286 aaKnown RBP9.14□□□□□ -0.95
PRPF39-209ENST00000556353 VAV3Q9UKW4 847 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 PCDHB5Q9Y5E4 795 aa9.14□□□□□ -0.95
PRPF39-209ENST00000556353 TMEM265A0A087WTH1 108 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 IGF2BP3O00425 579 aaKnown RBP eCLIP9.13□□□□□ -0.95
PRPF39-209ENST00000556353 ITIH2P19823 946 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 PRKCQQ04759 706 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 PLCL1Q15111 1095 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 CBLL1Q75N03 491 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 HRASLS5Q96KN8 279 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 FAM161BQ96MY7 647 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 NOC4LQ9BVI4 516 aaKnown RBP9.13□□□□□ -0.95
PRPF39-209ENST00000556353 MIR1-1HGQ9H1L0 117 aa9.13□□□□□ -0.95
PRPF39-209ENST00000556353 CDK8P49336 464 aa9.12□□□□□ -0.95
PRPF39-209ENST00000556353 ST13P50502 369 aaKnown RBP9.12□□□□□ -0.95
PRPF39-209ENST00000556353 FAM214BQ7L5A3 538 aa9.12□□□□□ -0.95
PRPF39-209ENST00000556353 WFDC3Q8IUB2 231 aa9.12□□□□□ -0.95
PRPF39-209ENST00000556353 FBRSQ9HAH7 460 aa9.12□□□□□ -0.95
PRPF39-209ENST00000556353 PLAGL2Q9UPG8 496 aa9.12□□□□□ -0.95
PRPF39-209ENST00000556353 AOC3Q16853 763 aa9.11□□□□□ -0.95
PRPF39-209ENST00000556353 HID1Q8IV36 788 aa9.11□□□□□ -0.95
PRPF39-209ENST00000556353 FOXQ1Q9C009 403 aa9.11□□□□□ -0.95
PRPF39-209ENST00000556353 PRDM5Q9NQX1 630 aaPredicted RBP9.11□□□□□ -0.95
PRPF39-209ENST00000556353 GNAT3A8MTJ3 354 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 SORBS3O60504 671 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 EOMESO95936 686 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 CTSHP09668 335 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 CD8BP10966 210 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 SLBPQ14493 270 aaKnown RBP eCLIP9.1□□□□□ -0.95
PRPF39-209ENST00000556353 TNKS2Q9H2K2 1166 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 MRS2Q9HD23 443 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 SNX11Q9Y5W9 270 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 TACC3Q9Y6A5 838 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 USP31Q70CQ4 1352 aa9.1□□□□□ -0.95
PRPF39-209ENST00000556353 TFE3P19532 575 aaPredicted RBP9.09□□□□□ -0.95
PRPF39-209ENST00000556353 GRK4P32298 578 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 ITGAEP38570 1179 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 CAP2P40123 477 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 NKG7Q16617 165 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 DIEXFQ68CQ4 756 aaKnown RBP9.09□□□□□ -0.95
PRPF39-209ENST00000556353 MFSD2AQ8NA29 543 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 CRELD1Q96HD1 420 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 KRTAP9-2Q9BYQ4 174 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 MAPK8IP1Q9UQF2 711 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 RNF114Q9Y508 228 aa9.09□□□□□ -0.95
PRPF39-209ENST00000556353 GFRA2O00451 464 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 SLITRK5O94991 958 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 FUT4P22083 530 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 CD96P40200 585 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 TXKP42681 527 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 TAGLNQ01995 201 aaKnown RBP9.08□□□□□ -0.96
PRPF39-209ENST00000556353 TSNAXIP1Q2TAA8 658 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 FMNL2Q96PY5 1086 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 MIPEPQ99797 713 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 VTI1BQ9UEU0 232 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 TPX2Q9ULW0 747 aaKnown RBP9.08□□□□□ -0.96
PRPF39-209ENST00000556353 TLR6Q9Y2C9 796 aa9.08□□□□□ -0.96
PRPF39-209ENST00000556353 ZNF792Q3KQV3 632 aa9.07□□□□□ -0.96
PRPF39-209ENST00000556353 ANGEL2Q5VTE6 544 aaKnown RBP9.07□□□□□ -0.96
PRPF39-209ENST00000556353 SPACA3Q8IXA5 215 aa9.07□□□□□ -0.96
PRPF39-209ENST00000556353 PHC3Q8NDX5 983 aa9.07□□□□□ -0.96
PRPF39-209ENST00000556353 JARID2Q92833 1246 aaPredicted RBP9.07□□□□□ -0.96
PRPF39-209ENST00000556353 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.06□□□□□ -0.96
PRPF39-209ENST00000556353 PRAMEF13Q5VWM6 474 aa9.06□□□□□ -0.96
PRPF39-209ENST00000556353 ASB11Q8WXH4 323 aa9.06□□□□□ -0.96
PRPF39-209ENST00000556353 CST3P01034 146 aaPredicted RBP9.05□□□□□ -0.96
PRPF39-209ENST00000556353 PGRP06401 933 aa9.05□□□□□ -0.96
PRPF39-209ENST00000556353 JUNBP17275 347 aaPredicted RBP9.05□□□□□ -0.96
PRPF39-209ENST00000556353 ITGB5P18084 799 aa9.05□□□□□ -0.96
PRPF39-209ENST00000556353 RPL6Q02878 288 aaKnown RBP9.05□□□□□ -0.96
PRPF39-209ENST00000556353 PDE4BQ07343 736 aa9.05□□□□□ -0.96
PRPF39-209ENST00000556353 NKPD1Q17RQ9 610 aa9.05□□□□□ -0.96
PRPF39-209ENST00000556353 PI4K2BQ8TCG2 481 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms