RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 AKAP2Q9Y2D5 859 aa7.85□□□□□ -1.15
TMEM260-209ENST00000556079 PPP2R3BQ9Y5P8 575 aa7.85□□□□□ -1.15
TMEM260-209ENST00000556079 SNCAIPQ9Y6H5 919 aa7.85□□□□□ -1.15
TMEM260-209ENST00000556079 CEP290O15078 2479 aa7.85□□□□□ -1.15
TMEM260-209ENST00000556079 ATAD5Q96QE3 1844 aa7.85□□□□□ -1.15
TMEM260-209ENST00000556079 MAST3O60307 1309 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 PTPRFP10586 1907 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 DOCK1Q14185 1865 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 SEMA3EO15041 775 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 SNPHO15079 494 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 MMP14P50281 582 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 SREBF2Q12772 1141 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 RRP1BQ14684 758 aaKnown RBP7.84□□□□□ -1.15
TMEM260-209ENST00000556079 SUPT20HL1Q3ZLR7 823 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 TSHZ3Q63HK5 1081 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 BRI3BPQ8WY22 251 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 OPTNQ96CV9 577 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 WRNIP1Q96S55 665 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 TRIM17Q9Y577 477 aa7.84□□□□□ -1.15
TMEM260-209ENST00000556079 PDS5AQ29RF7 1337 aaKnown RBP7.83□□□□□ -1.16
TMEM260-209ENST00000556079 A0A0C4DFX4 3053 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 PPP1R12BO60237 982 aaPredicted RBP7.83□□□□□ -1.16
TMEM260-209ENST00000556079 IREB2P48200 963 aaKnown RBP7.83□□□□□ -1.16
TMEM260-209ENST00000556079 TNNI2P48788 182 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 JAG1P78504 1218 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 TNFAIP1Q13829 316 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 NOM1Q5C9Z4 860 aaKnown RBP7.83□□□□□ -1.16
TMEM260-209ENST00000556079 ERICH6Q7L0X2 663 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 MIGA1Q8NAN2 632 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 RHPN1Q8TCX5 695 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 FAM151AQ8WW52 585 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 CRBNQ96SW2 442 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 GPR108Q9NPR9 543 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 AATFQ9NY61 560 aaKnown RBP eCLIP7.83□□□□□ -1.16
TMEM260-209ENST00000556079 TMOD2Q9NZR1 351 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 DDX19BQ9UMR2 479 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 SUGT1Q9Y2Z0 365 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 MYH1P12882 1939 aa7.83□□□□□ -1.16
TMEM260-209ENST00000556079 RPAP1Q9BWH6 1393 aaPredicted RBP7.83□□□□□ -1.16
TMEM260-209ENST00000556079 GPR75-ASB3A0A0A6YYF3 556 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 SMIM22K7EJ46 135 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 UQCRFS1P1P0C7P4 283 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 RRP1P56182 461 aaKnown RBP7.82□□□□□ -1.16
TMEM260-209ENST00000556079 MAP3K9P80192 1104 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 CRHR2Q13324 411 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 DDX60LQ5H9U9 1706 aaKnown RBP7.82□□□□□ -1.16
TMEM260-209ENST00000556079 OTOP1Q7RTM1 612 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 FAM83AQ86UY5 434 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 MAPKAPK5Q8IW41 473 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 ANKRD13AQ8IZ07 590 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 FAM43AQ8N2R8 423 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 NAV1Q8NEY1 1877 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 OTUD7AQ8TE49 926 aaPredicted RBP7.82□□□□□ -1.16
TMEM260-209ENST00000556079 MRIQ9BWK5 157 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 CFHR5Q9BXR6 569 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 PLSCR2Q9NRY7 297 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 LRP2BPQ9P2M1 347 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 SAP30BPQ9UHR5 308 aaKnown RBP7.82□□□□□ -1.16
TMEM260-209ENST00000556079 PCDHB15Q9Y5E8 787 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 MYH7P12883 1935 aa7.82□□□□□ -1.16
TMEM260-209ENST00000556079 BAZ2AQ9UIF9 1905 aaKnown RBP7.82□□□□□ -1.16
TMEM260-209ENST00000556079 CCL15-CCL14A0A0B4J2E2 113 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 PHF20L1A8MW92 1017 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 IRF6O14896 467 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 IDH1O75874 414 aaKnown RBP7.81□□□□□ -1.16
TMEM260-209ENST00000556079 MOGSQ13724 837 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 CCL15Q16663 113 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 HABP4Q5JVS0 413 aaKnown RBP7.81□□□□□ -1.16
TMEM260-209ENST00000556079 CCDC158Q5M9N0 1113 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 FKBP1CQ5VVH2 108 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 ZSCAN29Q8IWY8 852 aaPredicted RBP7.81□□□□□ -1.16
TMEM260-209ENST00000556079 TEX11Q8IYF3 940 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 MAGEB6Q8N7X4 407 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.81□□□□□ -1.16
TMEM260-209ENST00000556079 CD99L2Q8TCZ2 262 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 DNAJC2Q99543 621 aaKnown RBP7.81□□□□□ -1.16
TMEM260-209ENST00000556079 TMEM121BQ9BXQ6 578 aaPredicted RBP7.81□□□□□ -1.16
TMEM260-209ENST00000556079 IDI2Q9BXS1 227 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 MFRPQ9BY79 579 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 ZNF341Q9BYN7 854 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 TRIOBPQ9H2D6 2365 aa7.81□□□□□ -1.16
TMEM260-209ENST00000556079 LAMA3Q16787 3333 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 MANSC4A6NHS7 340 aaPredicted RBP7.8□□□□□ -1.16
TMEM260-209ENST00000556079 SPDYE5A6NIY4 337 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 GOLIM4O00461 696 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 ALDH1A1P00352 501 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 EN2P19622 333 aaPredicted RBP7.8□□□□□ -1.16
TMEM260-209ENST00000556079 CYP7A1P22680 504 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 PDE3AQ14432 1141 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 SPTY2D1Q68D10 685 aaPredicted RBP7.8□□□□□ -1.16
TMEM260-209ENST00000556079 NAA16Q6N069 864 aaPredicted RBP7.8□□□□□ -1.16
TMEM260-209ENST00000556079 ZGPATQ8N5A5 531 aaKnown RBP7.8□□□□□ -1.16
TMEM260-209ENST00000556079 FBXO22Q8NEZ5 403 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 ARHGAP39Q9C0H5 1083 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 DNAJC18Q9H819 358 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 CSADQ9Y600 493 aa7.8□□□□□ -1.16
TMEM260-209ENST00000556079 FLT1P17948 1338 aa7.79□□□□□ -1.16
TMEM260-209ENST00000556079 BTBD19C9JJ37 291 aa7.79□□□□□ -1.16
TMEM260-209ENST00000556079 PEX10O60683 326 aa7.79□□□□□ -1.16
TMEM260-209ENST00000556079 ENTPD3O75355 529 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms