RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 CRACR2BQ8N4Y2 399 aaPredicted RBP14.58□□□□□ -0.08
SHMT2-209ENST00000553949 HERC5Q9UII4 1024 aaKnown RBP14.58□□□□□ -0.08
SHMT2-209ENST00000553949 NAV1Q8NEY1 1877 aa14.58□□□□□ -0.08
SHMT2-209ENST00000553949 CDK5RAP2Q96SN8 1893 aa14.58□□□□□ -0.08
SHMT2-209ENST00000553949 POLR2AP24928 1970 aaKnown RBP14.57□□□□□ -0.08
SHMT2-209ENST00000553949 FAM196BA6NMK8 535 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 PPP1R12BO60237 982 aaPredicted RBP14.57□□□□□ -0.08
SHMT2-209ENST00000553949 EIF5BO60841 1220 aaKnown RBP14.57□□□□□ -0.08
SHMT2-209ENST00000553949 GABPAQ06546 454 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 PRKG1Q13976 671 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 CST9Q5W186 159 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 DYNLL2Q96FJ2 89 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 TRIM34Q9BYJ4 488 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 ZNF341Q9BYN7 854 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 DNAJC18Q9H819 358 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.57□□□□□ -0.08
SHMT2-209ENST00000553949 ANAPC4Q9UJX5 808 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 FZD1Q9UP38 647 aa14.57□□□□□ -0.08
SHMT2-209ENST00000553949 RBM8AQ9Y5S9 174 aaKnown RBP14.57□□□□□ -0.08
SHMT2-209ENST00000553949 ZNF213O14771 459 aa14.56□□□□□ -0.08
SHMT2-209ENST00000553949 USP2O75604 605 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-209ENST00000553949 SLC3A2P08195 630 aaKnown RBP14.56□□□□□ -0.08
SHMT2-209ENST00000553949 HAND2P61296 217 aa14.56□□□□□ -0.08
SHMT2-209ENST00000553949 TTLL12Q14166 644 aaPredicted RBP14.56□□□□□ -0.08
SHMT2-209ENST00000553949 IMMTQ16891 758 aaKnown RBP14.56□□□□□ -0.08
SHMT2-209ENST00000553949 C16orf86Q6ZW13 317 aa14.56□□□□□ -0.08
SHMT2-209ENST00000553949 SWAP70Q9UH65 585 aa14.56□□□□□ -0.08
SHMT2-209ENST00000553949 TAOK2Q9UL54 1235 aa14.56□□□□□ -0.08
SHMT2-209ENST00000553949 ROBO3Q96MS0 1386 aa14.56□□□□□ -0.08
SHMT2-209ENST00000553949 PHF20L1A8MW92 1017 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 EPB41L2O43491 1005 aaKnown RBP14.55□□□□□ -0.08
SHMT2-209ENST00000553949 SEC24BO95487 1268 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 SHMT1P34896 483 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 FKBP1BP68106 108 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 CTDSPL2Q05D32 466 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 NECTIN1Q15223 517 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 ARMC9Q7Z3E5 817 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 STK11IPQ8N1F8 1099 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 C2orf69Q8N8R5 385 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 SLC44A5Q8NCS7 719 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 KLRG1Q96E93 195 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 NBPF3Q9H094 633 aa14.55□□□□□ -0.08
SHMT2-209ENST00000553949 GBA2Q9HCG7 927 aaPredicted RBP14.55□□□□□ -0.08
SHMT2-209ENST00000553949 ANGEL1Q9UNK9 670 aaKnown RBP14.55□□□□□ -0.08
SHMT2-209ENST00000553949 CYP21A2P08686 494 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 IREB2P48200 963 aaKnown RBP14.54□□□□□ -0.08
SHMT2-209ENST00000553949 CDK8P49336 464 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 PDE4BQ07343 736 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 MAP3K11Q16584 847 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 TATDN1Q6P1N9 297 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 MOB2Q70IA6 237 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 TBC1D10CQ8IV04 446 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.54□□□□□ -0.088e-7■■□□□ 11.7
SHMT2-209ENST00000553949 WRNIP1Q96S55 665 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 USP26Q9BXU7 913 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 ZNF112Q9UJU3 913 aa14.54□□□□□ -0.08
SHMT2-209ENST00000553949 MYH1P12882 1939 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 BAZ2AQ9UIF9 1905 aaKnown RBP14.53□□□□□ -0.08
SHMT2-209ENST00000553949 UBE2Q2LH0YL09 131 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 SLC27A2O14975 620 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 RRP1BQ14684 758 aaKnown RBP14.53□□□□□ -0.08
SHMT2-209ENST00000553949 AKNAD1Q5T1N1 836 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 CREB3L3Q68CJ9 461 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 MKNK2Q9HBH9 465 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 ZNF287Q9HBT7 754 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 INCENPQ9NQS7 918 aa14.53□□□□□ -0.08
SHMT2-209ENST00000553949 SIPA1L1O43166 1804 aa14.52□□□□□ -0.08
SHMT2-209ENST00000553949 TMEM88BA6NKF7 163 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 PRDM1O75626 825 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 FGRP09769 529 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 PCP11498 1178 aaKnown RBP14.52□□□□□ -0.09
SHMT2-209ENST00000553949 HSPA4P34932 840 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 APLP1P51693 650 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 MAP3K9P80192 1104 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 CERKLQ49MI3 558 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-209ENST00000553949 LDLRAD1Q5T700 205 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 RNF20Q5VTR2 975 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 MFSD6Q6ZSS7 791 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 STAG1Q8WVM7 1258 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 RNF41Q9H4P4 317 aaPredicted RBP14.52□□□□□ -0.09
SHMT2-209ENST00000553949 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.52□□□□□ -0.09
SHMT2-209ENST00000553949 TACC3Q9Y6A5 838 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 TAF6LQ9Y6J9 622 aa14.52□□□□□ -0.09
SHMT2-209ENST00000553949 ORC4O43929 436 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 CTNND1O60716 968 aaKnown RBP14.51□□□□□ -0.09
SHMT2-209ENST00000553949 RASA1P20936 1047 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 INPP5BP32019 993 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 CAP2P40123 477 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 VGLL4Q14135 290 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-209ENST00000553949 ANKRD13AQ8IZ07 590 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 ZNF444Q8N0Y2 327 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-209ENST00000553949 ZKSCAN4Q969J2 545 aaPredicted RBP14.51□□□□□ -0.09
SHMT2-209ENST00000553949 PAPPA2Q9BXP8 1791 aa14.51□□□□□ -0.09
SHMT2-209ENST00000553949 LAMB1P07942 1786 aa14.5□□□□□ -0.09
SHMT2-209ENST00000553949 NEDD4P46934 1319 aa14.5□□□□□ -0.09
SHMT2-209ENST00000553949 UNCXA6NJT0 531 aa14.5□□□□□ -0.09
SHMT2-209ENST00000553949 GDF11O95390 407 aa14.5□□□□□ -0.09
SHMT2-209ENST00000553949 AKR1B1P15121 316 aa14.5□□□□□ -0.09
SHMT2-209ENST00000553949 HUNKP57058 714 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms